View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_112 (Length: 321)
Name: NF10049A_low_112
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_112 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 13960318 - 13960622
Alignment:
| Q |
11 |
cagagaaacatcaagcagttgcactccgagtaacagcagacagagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960318 |
cagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
13960417 |
T |
|
| Q |
111 |
ccaacgtcaattctaccgtgactgcagcatctctggcataaccgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960418 |
ccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
13960517 |
T |
|
| Q |
211 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatccgacagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13960518 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatctgacagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
13960617 |
T |
|
| Q |
311 |
cacta |
315 |
Q |
| |
|
||||| |
|
|
| T |
13960618 |
cacta |
13960622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 13967491 - 13967674
Alignment:
| Q |
20 |
atcaagcagttgcactccgagtaacagcagacagagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtca |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| ||||||| ||||| || |||| ||||| ||||||| || | ||||||||||||| |
|
|
| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
|
| Q |
120 |
attctaccgtgactgcagcatctctggcataaccgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaat |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||| | | | || |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaactaat |
13967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 49871189 - 49870992
Alignment:
| Q |
19 |
catcaagcagttgcactccgagtaacagcagacagagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
118 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| |||| | ||||||||||| |||| | |||||||||| ||||||| | | ||||| || | | |
|
|
| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
|
| Q |
119 |
aattctaccgtgactgcagcatctctggcataaccgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
216 |
Q |
| |
|
|||||||||| ||||||| ||| | || | || |||| | ||| ||||| || ||| ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaacca |
49870992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 49865249 - 49865135
Alignment:
| Q |
22 |
caagcagttgcactccgagtaacagcagacagagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaat |
121 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| |||| | ||||||||||| ||||| || |||||||||| ||||||| | | ||||| || | |||| |
|
|
| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
|
| Q |
122 |
tctaccgtgactgca |
136 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
49865149 |
tctaccgcgactgca |
49865135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University