View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_114 (Length: 319)
Name: NF10049A_low_114
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_114 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 4146373 - 4146063
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcttcgaagtagacacgtgacnnnnnnnctcaaagttcgacgaggcatcaaacttaacn |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4146373 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaaca |
4146274 |
T |
|
| Q |
106 |
nnnnnntctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaattatttatatatacacataaagagactaaag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4146273 |
aaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag |
4146174 |
T |
|
| Q |
206 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146173 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
4146074 |
T |
|
| Q |
306 |
ataatctaccc |
316 |
Q |
| |
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| || |||||| |
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|
| T |
4146073 |
aaaagctaccc |
4146063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8018266 - 8018306
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagat |
46 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
8018266 |
aaaagtttcagctgcatcactccgaagaaaattcaaaagat |
8018306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 41430382 - 41430422
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagat |
46 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
41430382 |
aaaagttccagctgcatcactccgaagaaaattcaaaagat |
41430422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 12734766 - 12734726
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagat |
46 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
12734766 |
aaaagttccagctgcatcactccgaagaagattcaaaagat |
12734726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 30269629 - 30269670
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagatt |
47 |
Q |
| |
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||||||||||||||||| |||||||||||| || |||||||| |
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| T |
30269629 |
aaaagttccagctgcatcactccgaagaaagttgaaaagatt |
30269670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 44269660 - 44269700
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagaaaattcaaaagat |
46 |
Q |
| |
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||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
44269660 |
aaaagttccagctgcatcacttcgaagaagattcaaaagat |
44269700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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