View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_117 (Length: 318)
Name: NF10049A_low_117
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_117 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 9210516 - 9210797
Alignment:
| Q |
14 |
agaaagcaattgaaaaatggaatgggataaagatgcttgttgaatttcaccatgaattccaaaattatgaattattgctacgaattattggtaaattatc |
113 |
Q |
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| T |
9210516 |
agaaagcaattgaaaaatggaatgggataaagatgcttgttgaatttcaccatgaattccaaaattatgaattattggtacgaattattggtaaattatc |
9210615 |
T |
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| Q |
114 |
tgtnnnnnnnttcagggtgaagatacgaaaatatagaaatattggtactaattatcagcctctgttgctaggactgctcatctttatatattttaattaa |
213 |
Q |
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| T |
9210616 |
tgtaaaaaaattcagggtgaagatacaaaaaaatagaaatattggtactaattatcagcctctgttgctaggactgctcatctttatatattttaattaa |
9210715 |
T |
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| Q |
214 |
caaaacttttcatcgtacatatatgggagttgtttaattttggtcttcaagacttcaacattaaaatcgaaaacaaagatgcaaa |
298 |
Q |
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| T |
9210716 |
caaaacttttcatcg--cacatatgggagttgtttaattttggtc-tcaagacttcaacattaaaatcgaaaacaaagatgcaaa |
9210797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 28844269 - 28844206
Alignment:
| Q |
14 |
agaaagcaattgaaaaatggaatgggataaagatgcttgttgaatttcaccatgaattccaaaa |
77 |
Q |
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| T |
28844269 |
agaaagctgttgaaaaatggaattggatatagatgcttgttgaatttcactgtgaattccaaaa |
28844206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 29407448 - 29407511
Alignment:
| Q |
14 |
agaaagcaattgaaaaatggaatgggataaagatgcttgttgaatttcaccatgaattccaaaa |
77 |
Q |
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| T |
29407448 |
agaaagctgttgaaaaatggaattggatatagatgcttgttgaatttcactgtgaattccaaaa |
29407511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 31907306 - 31907370
Alignment:
| Q |
14 |
agaaagcaattgaaaaatggaatgggataaagatgcttgttgaatttcaccatgaattccaaaat |
78 |
Q |
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| T |
31907306 |
agaaagcaattgaaaaaggaaattggatatagatgcttgttgaatttcatggtgaattccaaaat |
31907370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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