View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_12 (Length: 470)
Name: NF10049A_low_12
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_12 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 42 - 464
Target Start/End: Original strand, 14877664 - 14878081
Alignment:
| Q |
42 |
taaaattttaatttaaattaaaggactatggtgttgctttgatcaaggtaatttttcttttgcaacatctagtagtgtgtatacatataatcacaccaaa |
141 |
Q |
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||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||| || | |||||||||||||||| |
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| T |
14877664 |
taaaactttagtttaaattaaaggactatggtgttgctttaatcaaggtattttttcttgcgcaacatctag--gtgtatacatatataatcacaccaaa |
14877761 |
T |
|
| Q |
142 |
cataaccctattcgatacaaagcaaattcaacaaaaacatttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggct |
241 |
Q |
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||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14877762 |
cataaccct---cgataaaaagcaaattcaacaaaaacatatttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttagtaggct |
14877858 |
T |
|
| Q |
242 |
ggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctccttt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14877859 |
ggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctccttt |
14877958 |
T |
|
| Q |
342 |
atcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatca |
441 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14877959 |
atcatttgtaaatggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatca |
14878058 |
T |
|
| Q |
442 |
atgtctcgaaatccagctcgtgt |
464 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
14878059 |
acatctcgaaatccagctcgtgt |
14878081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 271 - 464
Target Start/End: Complemental strand, 14759852 - 14759659
Alignment:
| Q |
271 |
aactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacag |
370 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| | ||||| |||||||| |||| |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
|
| Q |
371 |
cttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
464 |
Q |
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|||||||||||| |||| |||| ||||||||||| ||||||||| | |||||||||||||||||| |||| |||| || |||||| ||||| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaacatctccaagtccagcacgtgt |
14759659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 181 - 442
Target Start/End: Original strand, 14785943 - 14786204
Alignment:
| Q |
181 |
tttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaa |
280 |
Q |
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||||||||||||||||| ||||| ||| || || |||| | ||||| |||| |||||| |||| |||| ||||||| |||||||||| ||||||| |
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| T |
14785943 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcacacttagtaggcttgttagtgttactcttaagcacactatccatttctttaa |
14786042 |
T |
|
| Q |
281 |
ccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccagg |
380 |
Q |
| |
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| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||| ||| ||||||| |
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| T |
14786043 |
caaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccagg |
14786142 |
T |
|
| Q |
381 |
aagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
442 |
Q |
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|| | ||||||| ||||| |||||||||||||||| | | ||||||||||||| |||||| |
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| T |
14786143 |
aatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaa |
14786204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 442
Target Start/End: Original strand, 14766915 - 14767121
Alignment:
| Q |
236 |
taggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctc |
335 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||| ||| |
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| T |
14766915 |
taggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctc |
14767014 |
T |
|
| Q |
336 |
tcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaacca |
435 |
Q |
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||||||| ||||| | ||||| |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
14767015 |
tcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaacca |
14767114 |
T |
|
| Q |
436 |
aaatcaa |
442 |
Q |
| |
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|| |||| |
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| T |
14767115 |
aattcaa |
14767121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 14873113 - 14873217
Alignment:
| Q |
227 |
cacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaa |
326 |
Q |
| |
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||||| || |||| |||||||| ||||||||||| |||| |||||||||||||| |||||||||||| ||| ||||||| ||||||||||||| |
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| T |
14873113 |
cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa |
14873212 |
T |
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| Q |
327 |
acctt |
331 |
Q |
| |
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||||| |
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| T |
14873213 |
acctt |
14873217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 14873265 - 14873313
Alignment:
| Q |
394 |
cctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
442 |
Q |
| |
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|||||||||||||||||||||||| || ||| |||||||| ||||||| |
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| T |
14873265 |
cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaa |
14873313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 187 - 464
Target Start/End: Original strand, 83864 - 84141
Alignment:
| Q |
187 |
aaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacc |
286 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||| ||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
83864 |
aaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacc |
83963 |
T |
|
| Q |
287 |
tctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagc |
386 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||| |||| || | || ||||||| || |
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| T |
83964 |
tctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattagt |
84063 |
T |
|
| Q |
387 |
accatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
464 |
Q |
| |
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|||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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|
| T |
84064 |
accatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaacatctctaaatccagcacgtgt |
84141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 464
Target Start/End: Original strand, 11999596 - 11999733
Alignment:
| Q |
327 |
acctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttc |
426 |
Q |
| |
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||||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||| |||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
427 |
ccccaaccaaaatcaatgtctcgaaatccagctcgtgt |
464 |
Q |
| |
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||||||||||| |||| |||| ||||||||| ||||| |
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|
| T |
11999696 |
ccccaaccaaactcaacatctctaaatccagcacgtgt |
11999733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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