View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_124 (Length: 310)

Name: NF10049A_low_124
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_124
NF10049A_low_124
[»] chr3 (2 HSPs)
chr3 (7-302)||(55075128-55075423)
chr3 (73-152)||(50371212-50371291)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 55075128 - 55075423
Alignment:
Q  7 gcttggtggaagagatggaaaaggccaccaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcaca 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55075128 gcttggtggaagagatggaaaaggccaacaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcaca 55075227  T
Q  107 tgaaagtccatgttatctctccccacaaatcctctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaa 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55075228 tgaaagtccatgttatctctccccacaaatcatctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaa 55075327  T
Q  207 gatgctaacctctactctatccagctagattagtcttctgttgtttggaattttaattgatattagtaattttgtgtggtttctaaaatattcttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55075328 gatgctaacctctactctatccagctagattagtcttctgttgtttgaaattttaattgatattagtaattttgtgtggtttctaaaatattcttc 55075423  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 50371291 - 50371212
Alignment:
Q  73 aagttgattgtgacttaacctttcacttggcacatgaaagtccatgtta-tctctccccacaaatcctctcatcaagacaa 152  Q
    |||||||| ||||||| |||||||| |||||||||||||  |||||||| ||||||||||||| || ||||||||||||||    
T  50371291 aagttgatggtgactttacctttcatttggcacatgaaa-accatgttactctctccccacaattcttctcatcaagacaa 50371212  T

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