View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_131 (Length: 305)

Name: NF10049A_low_131
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_131
NF10049A_low_131
[»] chr4 (8 HSPs)
chr4 (14-296)||(50968201-50968483)
chr4 (177-255)||(6067669-6067747)
chr4 (178-251)||(34505290-34505363)
chr4 (177-255)||(31553694-31553772)
chr4 (178-252)||(4690134-4690208)
chr4 (177-251)||(33871041-33871115)
chr4 (178-251)||(52818059-52818132)
chr4 (177-251)||(6071145-6071218)
[»] chr8 (7 HSPs)
chr8 (174-255)||(40866295-40866376)
chr8 (177-255)||(7895149-7895227)
chr8 (178-254)||(44415934-44416010)
chr8 (173-255)||(42014301-42014383)
chr8 (177-251)||(24864608-24864682)
chr8 (177-251)||(38085946-38086020)
chr8 (179-252)||(9963285-9963358)
[»] chr6 (7 HSPs)
chr6 (177-255)||(3992803-3992881)
chr6 (177-255)||(7432416-7432494)
chr6 (177-255)||(7441933-7442011)
chr6 (177-255)||(7425621-7425699)
chr6 (179-252)||(7432982-7433055)
chr6 (177-255)||(7418530-7418608)
chr6 (177-255)||(7414581-7414659)
[»] chr3 (9 HSPs)
chr3 (177-251)||(29618312-29618386)
chr3 (173-251)||(41552096-41552174)
chr3 (177-251)||(11580203-11580277)
chr3 (179-251)||(1488013-1488085)
chr3 (179-251)||(2031252-2031324)
chr3 (179-251)||(35679472-35679544)
chr3 (177-251)||(35687869-35687943)
chr3 (177-251)||(52638656-52638730)
chr3 (177-224)||(35692217-35692264)
[»] chr2 (11 HSPs)
chr2 (173-252)||(3197563-3197642)
chr2 (170-255)||(34643000-34643085)
chr2 (171-251)||(39082462-39082542)
chr2 (176-251)||(24359790-24359865)
chr2 (177-251)||(4713110-4713184)
chr2 (177-255)||(8884447-8884525)
chr2 (177-252)||(36772397-36772472)
chr2 (177-252)||(36793511-36793586)
chr2 (177-252)||(37559326-37559401)
chr2 (177-251)||(42968150-42968224)
chr2 (177-251)||(36756170-36756244)
[»] chr7 (6 HSPs)
chr7 (175-252)||(37022194-37022271)
chr7 (177-257)||(30034301-30034381)
chr7 (175-255)||(46075148-46075228)
chr7 (173-251)||(25287956-25288034)
chr7 (179-255)||(46972135-46972211)
chr7 (173-251)||(34984430-34984508)
[»] chr1 (10 HSPs)
chr1 (172-253)||(23058051-23058132)
chr1 (176-255)||(30340907-30340986)
chr1 (175-251)||(37369512-37369588)
chr1 (179-253)||(23057679-23057753)
chr1 (179-253)||(23057864-23057938)
chr1 (179-253)||(23061980-23062054)
chr1 (173-255)||(30320741-30320823)
chr1 (184-237)||(23057568-23057621)
chr1 (184-237)||(23061869-23061922)
chr1 (179-252)||(43065996-43066074)
[»] chr5 (1 HSPs)
chr5 (177-252)||(2626071-2626146)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 50968483 - 50968201
Alignment:
Q  14 tttttgatctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatctccgaagcaaaacgaacggctacgtgc 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  50968483 ttttttatctaggattcttaccaatgtcagaggactctacaaaacatttatcaatcccagtatggtgtttatttccgaagcaaaacgaacggctatgtgc 50968384  T
Q  114 aaccatgctatccggtttttctataacataatattttattgatcaagagaatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttg 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968383 aaccatgctatccggtttttctataacataatattttaatgatcaagaggatgtaatttcaacatggggatgtagctcaaatggtagagcgctcgctttg 50968284  T
Q  214 catgcgagaggcacggggttcgatcccccgcatctccattttataatttcaaatattccttttttcgcttattacatattttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50968283 catgcgagaggcacggggttcgatcccccgcatctccattttttaatttcaaatattccttttttcgcttattacatattttt 50968201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 6067669 - 6067747
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgataccctgcatctccatttt 6067747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 34505290 - 34505363
Alignment:
Q  178 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 34505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 31553694 - 31553772
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 31553772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 4690208 - 4690134
Alignment:
Q  178 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 4690134  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 33871115 - 33871041
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 33871041  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 52818059 - 52818132
Alignment:
Q  178 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctcca 52818132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 6071145 - 6071218
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||  | ||||| ||| |||||||||||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgat-ccccgcatctcca 6071218  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 40866376 - 40866295
Alignment:
Q  174 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866376 aacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 40866295  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7895227 - 7895149
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatttt 7895149  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 44415934 - 44416010
Alignment:
Q  178 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattt 254  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccattt 44416010  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 42014301 - 42014383
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  42014301 caacttgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccatttt 42014383  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 24864608 - 24864682
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 24864682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 38085946 - 38086020
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 38086020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 9963358 - 9963285
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctccat 9963285  T

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Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 3992881 - 3992803
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 3992803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7432494 - 7432416
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 7432416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7442011 - 7441933
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |||||||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcaactccatttt 7441933  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7425699 - 7425621
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| | ||| |||||||||||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtacggggattgataccccgcatctccatttt 7425621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 7433055 - 7432982
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||| |||||| ||||| ||||||||||||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgataccccgcatctccat 7432982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7418608 - 7418530
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||| || |||||||| ||||| |||||| |||||| | ||| |||| ||||||||||||    
T  7418608 atggggatgtagctcagatggtatagtgctcgcttagcatgtgagagggacggggattgataccccacatctccatttt 7418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7414659 - 7414581
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||| | |||||||||||||||||| ||||| |||||| | |||| ||||| ||  ||| |||||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggtatggggatcgataccttgcaactccatttt 7414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 29618312 - 29618386
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 29618386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 41552096 - 41552174
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  41552096 caacatggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcagctcca 41552174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 11580203 - 11580277
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 11580277  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 1488013 - 1488085
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 1488085  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 2031252 - 2031324
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcacctcca 2031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 35679472 - 35679544
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 35679544  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 35687869 - 35687943
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtatggggatcgataccccgcatctcca 35687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 52638730 - 52638656
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||  |||||||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccatgcatctcca 52638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 35692217 - 35692264
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagagg 224  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg 35692264  T

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Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 3197563 - 3197642
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3197563 caacctggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatcccccgcatctccat 3197642  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 34643085 - 34643000
Alignment:
Q  170 tttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  34643085 tttcaacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 34643000  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 39082462 - 39082542
Alignment:
Q  171 ttcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  39082462 ttcatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 39082542  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 24359790 - 24359865
Alignment:
Q  176 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  24359790 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 24359865  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 4713184 - 4713110
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatcccctgcatctcca 4713110  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 8884447 - 8884525
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 8884525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 36772472 - 36772397
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36772397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 36793586 - 36793511
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 36793511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 37559401 - 37559326
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 37559326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 42968150 - 42968224
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| |||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgataccctgcatctcca 42968224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 36756244 - 36756170
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 36756170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 37022271 - 37022194
Alignment:
Q  175 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  37022271 acatggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccat 37022194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 30034301 - 30034381
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccattttat 257  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccattttat 30034381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 46075228 - 46075148
Alignment:
Q  175 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||    
T  46075228 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatttt 46075148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 25287956 - 25288034
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  25287956 caacatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 25288034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 46972211 - 46972135
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgattccccgcgtctccatttt 46972135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 34984508 - 34984430
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  34984508 caacaaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 34984430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 23058132 - 23058051
Alignment:
Q  172 tcaacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 253  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23058132 tcaacaaggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccccgcatctccatt 23058051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 30340986 - 30340907
Alignment:
Q  176 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||||||    
T  30340986 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtttgatcccctgcatctccatttt 30340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 37369588 - 37369512
Alignment:
Q  175 acatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctcca 251  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  37369588 acatggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctcca 37369512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 23057753 - 23057679
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 253  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23057679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 23057938 - 23057864
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 253  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgataccctgcatctccatt 23057864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 23062054 - 23061980
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatt 253  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcaataccctgcatctccatt 23061980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 30320823 - 30320741
Alignment:
Q  173 caacatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccatttt 255  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||||| ||| |||||||||||||    
T  30320823 caacttggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgataccctgcatctccatttt 30320741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 23057621 - 23057568
Alignment:
Q  184 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 23061922 - 23061869
Alignment:
Q  184 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgat 237  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 43065996 - 43066074
Alignment:
Q  179 ggggatgtagctcaaatggtagagcgctcgc-----tttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||| ||||||||||||||||     || |||||||||||| |||||| ||||| ||||||||||||||    
T  43065996 ggggatgtagctcatatggtagagcgctcgcatcacttagcatgcgagaggtacggggctcgataccccgcatctccat 43066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 2626146 - 2626071
Alignment:
Q  177 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatcccccgcatctccat 252  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccat 2626071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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