View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_135 (Length: 301)
Name: NF10049A_low_135
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_135 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 2338377 - 2338668
Alignment:
| Q |
4 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
2338377 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagtagtggcacttgaaactttaatgggaagacaccctggtgatatactatcatagcttcagt |
2338476 |
T |
|
| Q |
104 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2338477 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgccgt |
2338576 |
T |
|
| Q |
204 |
agtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
295 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| ||| ||||| || |||| |||| |
|
|
| T |
2338577 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcccagagattgcaccattaa |
2338668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 2330521 - 2330807
Alignment:
| Q |
4 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330521 |
atggttgtgagtgaaaagtgcgatgtatatagttttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcacttcagt |
2330620 |
T |
|
| Q |
104 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
2330621 |
tagcatcgactcaagggatgaaattatgtgaagtattagaccaacgtctcccacttccaaataatgtaaaggttttactggacataattcgtgttgccgt |
2330720 |
T |
|
| Q |
204 |
agtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacacc |
290 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| || |||||||| |||||| |||||| ||||||| |||| ||||||| |||| |
|
|
| T |
2330721 |
agtagcatttggatgcttaaatctcaacccttgcgctcgaccatcaatgaaaagtgtgtcacagagttttgtcatagagcttgcacc |
2330807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 2321904 - 2322162
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2321904 |
actatggttgtgagtgaaaagtgcgatgtatatagctttggagttgtggcacttgaaactttaatgggaagacaccctggtgatatactgtcatcacttc |
2322003 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2322004 |
agttagcatcaactcaaggcattaagttatgtgaagtattagaccaacgtcttctacttccgaataatgtgatggttttacttgacataattcgtgttgc |
2322103 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtg |
259 |
Q |
| |
|
| | |||||||| |||||||||||||| ||| |||||||||| |||||| |||| |
|
|
| T |
2322104 |
cacaatagcatttgcttgcttaaatctcaatcctttctctcgaccaacaatgaaatgtg |
2322162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3954725 - 3954500
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||| | || | || ||| |||||||||||| |
|
|
| T |
3954725 |
actatggttgtaagtgaaaaatgtgatgtatatagttttggagtagtggcacttgaaattttagtgggaagatatcccgaggaaatattgtcatcacttc |
3954626 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| ||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3954625 |
aattaacatcaactcaagacatcaaattatgtgaagtattagaccaacgtctcccacttccaaatgatgtgaaagttttacttgacataattcatgttgt |
3954526 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatc |
226 |
Q |
| |
|
|||||| |||| |||||||||||||| |
|
|
| T |
3954525 |
tgtagtagcatctgcatgcttaaatc |
3954500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1089245 - 1089490
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||||| |||||| ||||||| |||| |
|
|
| T |
1089245 |
actatggctgtgagtgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctgaagatatattgtcatcccttc |
1089344 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | || ||||||||| ||||||||||||| ||||| |||||||||| ||| | | | | | | ||||||||||| |||||| |
|
|
| T |
1089345 |
aatcaacatcgacacaaagtatcaaattatgtcaagtattagaccaacgtcttccacttccaagtaaagaaatagctatccatgacataattcatgttgc |
1089444 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
246 |
Q |
| |
|
|| || ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1089445 |
cgtggtagcatttgcatgcttaaatctcaatcctcgttctcgacca |
1089490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1556973 - 1556679
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||| || || ||||||||||||||| | ||||| || ||||| ||| ||||||||||||||| |
|
|
| T |
1556973 |
actatggttgtgaatgaaaagtgtgatgcatatagttttggtgttgtagcacttgaaactttagttggaaggcatcctggagatttactgtcatcacttc |
1556874 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
||| | ||||||| | | | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | ||| ||| ||||||||||| ||||| |
|
|
| T |
1556873 |
agtcaacatcgacacgaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgacatagttatacgtgacataattcatgttgt |
1556774 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
295 |
Q |
| |
|
|| || |||||||||||||||||| |||| |||| ||||||||| |||||| |||||| | ||||| ||||| || |||||||| |||| |
|
|
| T |
1556773 |
cgtggttgcatttgcatgcttaaatatcaatcctcattctcgaccaacaatgaaacgtgtgtcacaaagttttgtcactgaacttacaccattaa |
1556679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1596998 - 1597292
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||| | ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
1596998 |
actatggcggtgaatgaaaagtgtgatgtatatagctttggcgtggtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcacttc |
1597097 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| || ||| ||| | ||||||||| |||||| |
|
|
| T |
1597098 |
aatcatcatcgacacaaagtctcaaactatgtcaagtattagaccaacgtcttccacttccaaataatgagatagttatacgtcacataattcatgttgc |
1597197 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
295 |
Q |
| |
|
|||| |||||||||||||||| | | | ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||||||||| |||| |
|
|
| T |
1597198 |
catagttgcatttgcatgcttaactattgatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccattaa |
1597292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 1550153 - 1549892
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| ||| | |||| ||||||| |||||| || ||||||||| |
|
|
| T |
1550153 |
actatggctgtgaatgagaagtgtgatgtatatagttttggtgtagtggcacttgaaacattagttggaaagcaccctgaggatatattggcatcacttc |
1550054 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | ||||||| ||| | || ||||||||| ||||||||||||| ||| | |||||||||||||||| | ||| ||| ||||||||||| ||||| |
|
|
| T |
1550053 |
aatctccatcgacacaaagtatcaaattatgtcaagtattagaccaacgtattccacttccaaataatgaaatagttatacgtgacataattcaagttgc |
1549954 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
262 |
Q |
| |
|
|| || ||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
1549953 |
cgtggtagcatttgcatgtttaaatctcaatcctcgctctcgaccaacaatgaaatgtgtgt |
1549892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 295
Target Start/End: Original strand, 1604975 - 1605266
Alignment:
| Q |
4 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
103 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| ||||||||||||| | |
|
|
| T |
1604975 |
atggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatcacttcaat |
1605074 |
T |
|
| Q |
104 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatg-tgaaggttttacttgacataattcgtgttgctg |
202 |
Q |
| |
|
| ||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | || | ||| ||| ||||||||||| |||||| | |
|
|
| T |
1605075 |
caaattcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgatgta-gttatacgtgacataattcatgttgccg |
1605173 |
T |
|
| Q |
203 |
tagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgttaa |
295 |
Q |
| |
|
| || |||||||||||||||||| |||| ||||| ||||||||| |||||| |||||| | ||||| ||||| ||||| ||||| |||| |
|
|
| T |
1605174 |
tggttgcatttgcatgcttaaatatcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcacggagctcacaccattaa |
1605266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3853226 - 3853449
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||| |||| | |||||||| |||| || ||| |||||||||||| |
|
|
| T |
3853226 |
actatggttgtaagtgaaaagtgtgatgtatatagttttggggtaatggcacttgaaattttattgggaagacatcctgaggaaatattgtcatcacttc |
3853325 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| ||| |||| ||||||| ||| ||| || |||||||| ||||| | ||||||| || ||||||||||| || ||||| |||| |||| |||| ||||| |
|
|
| T |
3853326 |
aattaacatcaactcaagacatcaaactacgtgaagtactagacaaacgtctccaacgtccaaataatgagatggtttcacttcacattattcaggttgc |
3853425 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaa |
224 |
Q |
| |
|
||| || ||||||||||| ||||| |
|
|
| T |
3853426 |
tgtcgtagcatttgcatgtttaaa |
3853449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 1540928 - 1540636
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||| | ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
1540928 |
actatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtgacacttgaaactttagttggaaggcaccctggggatttattgtcatcacttc |
1540829 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| | | | ||| || || ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| |||| | |
|
|
| T |
1540828 |
aatcaacatcgacaagaagtgtcaaactacgtcaagtattagaccaacgtcttccacttccaaataatgacatagttatacgtgacataattcatgtttc |
1540729 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagcttacaccgtt |
293 |
Q |
| |
|
| || |||||||||||||||||| ||| ||||| ||||||||| |||||| |||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
1540728 |
cctggtagcatttgcatgcttaaatggcaatcctcgttctcgaccaacaatgaaacgtgtgtcacaaagttttgtcaccgagcttacaccgtt |
1540636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 1106588 - 1106830
Alignment:
| Q |
4 |
atggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagt |
103 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||| | ||||| ||||||| |||||| ||||||||||||| | |
|
|
| T |
1106588 |
atggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaagctttagttggaaggcaccctgaggatatattgtcatcacttcaat |
1106687 |
T |
|
| Q |
104 |
tagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgt |
203 |
Q |
| |
|
| ||| | ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||| |||||| || |
|
|
| T |
1106688 |
caaattcgccacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataacgacgtagttatacgtgacataattcatgttgccgt |
1106787 |
T |
|
| Q |
204 |
agtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
246 |
Q |
| |
|
|| |||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
1106788 |
ggttgcatttgcatgcttaaatatcaatcctcgttctcgacca |
1106830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 1564200 - 1563970
Alignment:
| Q |
30 |
atatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta |
129 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| | ||||| | ||||| |||||| ||||||||||||| | | ||||||| ||| | || |||||| |
|
|
| T |
1564200 |
atatagttttggtgtagtgacacttgaaactttagttggaaggaaacctggagatatattgtcatcacttcaatcaacatcgacacaaagtatcaaatta |
1564101 |
T |
|
| Q |
130 |
tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgctgtagtcgcatttgcatgcttaaatctca |
229 |
Q |
| |
|
||| ||||||||||||| ||||| | |||||||||||| | | ||| ||| ||||||||||| |||||| || || ||||||||| | |||||||||| |
|
|
| T |
1564100 |
tgtcaagtattagaccaacgtcttcgacttccaaataacgaaatagttatacgtgacataattcatgttgccgtggtagcatttgcaagtttaaatctca |
1564001 |
T |
|
| Q |
230 |
accctcgctctcgaccagaaatgaagtgtgt |
260 |
Q |
| |
|
| ||||| ||||||||| |||||| ||||| |
|
|
| T |
1564000 |
atcctcgttctcgaccaacaatgaaatgtgt |
1563970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 2335141 - 2335308
Alignment:
| Q |
82 |
gatatactgtcatcacttcagttagcatcgactcaaggcatgaaatta---tgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttt |
178 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||| |||||||||||| |||||||||||||| || | || || | ||||||||||||||| ||||| |
|
|
| T |
2335141 |
gatatattgtcatcacttcaatttgcatcaactctcggcatgaaattattatgtgaagtattagaacaacatcccctatttccaaataatgtgatggttt |
2335240 |
T |
|
| Q |
179 |
tacttgacataattcgtgttgctgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgacca |
246 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
2335241 |
tacttgacataattcgtgttgtcattgtagcatttgcatgcttaaatctcaatccttgctcttgacca |
2335308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 2326313 - 2326455
Alignment:
| Q |
122 |
tgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgac--ataattcgtgttgctgtagtcgcatttgcatgc |
219 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||| |||| |||||||||| | |
|
|
| T |
2326313 |
tgaagttatgtgaagtattagaccaacgtctcccacttctgaataatatgatggttttacttgacatataattcgtgttgccttagtagcatttgcatac |
2326412 |
T |
|
| Q |
220 |
ttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
262 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
2326413 |
ttaaatctcaatcctttctctcgaccaacaatgaaatgtgtgt |
2326455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 5580 - 5296
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
5580 |
actatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcacttc |
5481 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | |||| |
|
|
| T |
5480 |
aatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgc |
5381 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
285 |
Q |
| |
|
|| || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
5380 |
cgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
5296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18738808 - 18738524
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
18738808 |
actatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcacttc |
18738709 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || ||| |
|
|
| T |
18738708 |
aatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgctgc |
18738609 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
285 |
Q |
| |
|
|| || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18738608 |
cgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18738524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18743772 - 18743488
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
18743772 |
actatggctgttaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagttggaaggcaccctggggatttattgtcatcacttc |
18743673 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | | ||| ||||| ||||||||||||| ||||| |||||||||||||||| | ||| ||| ||||||||||| || ||| |
|
|
| T |
18743672 |
aatcaacatcgacacaaagtctcaaactatgtcaagtattagaccaccgtcttccacttccaaataatgacatagttatacgtgacataattcatgctgc |
18743573 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
285 |
Q |
| |
|
|| || |||||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18743572 |
cgtggtagcatttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18743488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18748739 - 18748455
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
18748739 |
actatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcacttc |
18748640 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | ||||||| ||| | | ||| ||||| ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | |||| |
|
|
| T |
18748639 |
aatcaacatcgacacaaagtgtcaaactatgtcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgc |
18748540 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgttgaagagtttcgtcacagagctt |
285 |
Q |
| |
|
|| || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
18748539 |
cgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgtcgcaaagttttgtcaccgagctt |
18748455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 18723087 - 18722826
Alignment:
| Q |
1 |
actatggttgtgagtgaaaagtgtgatgtatatagctttggagtagtggcacttgaaactttaataggaagacaccctggtgatatactgtcatcacttc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| ||| || |||||||||||| |
|
|
| T |
18723087 |
actatggctgtgaatgaaaagtgtgatgtatatagttttggtgtagtggcacttgaaactttagctggaaggcaccctggggatttattgtcatcacttc |
18722988 |
T |
|
| Q |
101 |
agttagcatcgactcaaggcatgaaattatgtgaagtattagaccagcgtctcccacttccaaataatgtgaaggttttacttgacataattcgtgttgc |
200 |
Q |
| |
|
| | | |||| || ||| | | ||| ||| | ||||||||||||||||||| |||||||||||||||| | |||| ||| | ||||||||| | |||| |
|
|
| T |
18722987 |
aatcaacatcaacacaaagtgtcaaactatatcaagtattagaccagcgtcttccacttccaaataatgaaatggttatacgtaacataattcattttgc |
18722888 |
T |
|
| Q |
201 |
tgtagtcgcatttgcatgcttaaatctcaaccctcgctctcgaccagaaatgaagtgtgtgt |
262 |
Q |
| |
|
|| || || ||||||||||||||| |||| ||||| ||||||||| |||||| ||||||| |
|
|
| T |
18722887 |
cgttgttgcctttgcatgcttaaatgtcaatcctcgttctcgaccaacaatgaaatgtgtgt |
18722826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University