View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_136 (Length: 301)
Name: NF10049A_low_136
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_136 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 49953268 - 49952974
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgtt-cgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49953268 |
tcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacgcttcaaca |
49953169 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49953168 |
tttttggggagcggaagtgcttcgtggtggtggatcacggacacgaagagtctcatatttaattgagagatgttaatgtgtcaagtgtggattaaaataa |
49953069 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
294 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
49953068 |
cacattgaatggcatataatagatattgaacaatatataagtgagatgacttataatgtcataagattttggatgtaactgttatgtcaatctca |
49952974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 39974687 - 39974981
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
39974687 |
tcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaaca |
39974786 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||| |||||| || | ||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
39974787 |
tttttggggagtggaagtgcttcgtggtggtggatcgcggacacaaagagtatcgtatttaattgagagatggtaatgtgtcaagtgtgggttaaaataa |
39974886 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
294 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || |||| |||| |||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
39974887 |
catattgaatgccatataatagatattgaataacatatcagtggaatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
39974981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 50 - 296
Target Start/End: Original strand, 281813 - 282059
Alignment:
| Q |
50 |
gtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagag |
149 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
281813 |
gtgttgtctcccccgtaagtcccaatggtgatatcatatacgcttcaacatttttgtggagcggaagtgctgtgtggtggtggatcgcggacacgaagag |
281912 |
T |
|
| Q |
150 |
tctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgac |
249 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
281913 |
tctcgtatttaattgagagatgttaatgtgtcaagtgtgggttaaaataacacattgaattccatataatatatattgaacaacatattagtgagatgac |
282012 |
T |
|
| Q |
250 |
ttgtaatgtcataagattatggatgtaactttgatgtccatctcatt |
296 |
Q |
| |
|
| ||||||| | ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
282013 |
tcataatgtcttgagattttggatgtaactgtgatgtcaatctcatt |
282059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 13228536 - 13228783
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||||||||| ||| | ||||| ||||| | || |||||||||||||| |||||| ||||| ||| ||||||||||||| | |||||||| |
|
|
| T |
13228536 |
tcattttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggctcccca-taagtttcaatggtgatatcatatccgcttcaaca |
13228634 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| || |||||||| ||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
13228635 |
tttttggggagcataagtggtttttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtgtgagttaaaataa |
13228734 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
|||||||||||| ||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
13228735 |
cacattgaatgc--aatagtagatgttgagaaacatataagtgagatgact |
13228783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 42757706 - 42757638
Alignment:
| Q |
116 |
gtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtg |
188 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
42757706 |
gtgcttcttggtggtggatcacagacacggagagtctc----ttaatagagagatgttaatgtgtcaattgtg |
42757638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 50814637 - 50814725
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
88 |
Q |
| |
|
||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
50814637 |
tcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
50814725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 281779 - 281814
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt |
36 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
281779 |
tcattctcacttgtgtggttgttttttctgcaatgt |
281814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 21589078 - 21588784
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
21589078 |
tcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcatatacgcttcaaca |
21588979 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
21588978 |
attatggggagcgaaagtgcttcgtggtggtggatcgtggacacgaagagtatcgtatttaattgagagatggtaatgtgtcaagggtgggttaaaataa |
21588879 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
294 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||| |||||||||||| |||| || ||||||| || |||||||| ||||||| |||||| |
|
|
| T |
21588878 |
cacattgaatgtcatataatagatattgaataacatatcagtgagatgactcataatctcttaagattttgaatgtaactgtgatgtcaatctca |
21588784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 13756379 - 13756590
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||||||||| ||| | ||||| |||||| |||| ||||||||| |||| || || | |||||||||| ||||||||||||| |||||||| |
|
|
| T |
13756379 |
tcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatatcatatctgcttcaaca |
13756478 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||| || |||||||||||| ||||| ||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
13756479 |
tttttggggagcggaagtggtccgtggtggtggatagtagatacaaagagtctcatgcttaatatagatatgttaatgtgtcaagtgtgagttaaaataa |
13756578 |
T |
|
| Q |
200 |
cacattgaatgc |
211 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13756579 |
cacattgaatgc |
13756590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23142039 - 23141828
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||| ||| ||||||||||||| |||||||| |
|
|
| T |
23142039 |
tcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatatcatatctgcttcaaca |
23141940 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||| |||| || ||||||||||| ||||| |||||||||||| ||||||| | || ||||||||| |
|
|
| T |
23141939 |
ttttcggggagcggaagtggtccgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaacgtgtcaagtatgagttaaaataa |
23141840 |
T |
|
| Q |
200 |
cacattgaatgc |
211 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23141839 |
cacattgaatgc |
23141828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 42797528 - 42797318
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| |||||| |||| ||||||||||||| |||| | ||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
42797528 |
tcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgctcctc-gtaagtctcaatggtgatatcatatctgcttcaaca |
42797430 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||| || ||||||||||| ||||| || ||||||||||||||||| |||| ||||||||| |
|
|
| T |
42797429 |
tttttggggagcggaagtggtctgtggtggtggatagcagatacagagagtctcatgcttaatagaaagatgttaatgtgtcaagtgtgagttaaaataa |
42797330 |
T |
|
| Q |
200 |
cacattgaatgc |
211 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42797329 |
cacattgaatgc |
42797318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 10901546 - 10901475
Alignment:
| Q |
140 |
acacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
211 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
10901546 |
acacggagagtctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgc |
10901475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 36095953 - 36096247
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
|||||||||| | |||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
36095953 |
tcattctcacctttgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtatcccccgtatgtcccaatggtgatatcatatacgcttcaaca |
36096052 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| || | |||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
36096053 |
tttttggggagcggaagtgcttcgtggtggtggatcgcggacacgaagagtatcgtatttaattgagagattgtaatgtgtcaagtgtgggttaaaataa |
36096152 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaatgtcataagattatggatgtaactttgatgtccatctca |
294 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| | |||||||||| |||| || ||||||| || |||||||| |||||| |||||| |
|
|
| T |
36096153 |
tacattgaatgccatataattgatattgaataacatatcaatgagatgactcataatctcttaagattttgaatgtaactgcgatgtcaatctca |
36096247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 12746237 - 12746103
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||||||||||||||| ||| || | || |||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
12746237 |
tcattctcacttgtgtgattgcttct-ctgcaatgtatcgaatcacacaagtgttgtctcccctgtaattcccaatggtgatatcatatacgcttcaaca |
12746139 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatc |
135 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
12746138 |
tttttggagagcggaaatgctttgtggtggtggatc |
12746103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 50332056 - 50331954
Alignment:
| Q |
146 |
agagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgaga |
245 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |||| || |||||||||||| |
|
|
| T |
50332056 |
agagtttcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagatgttgagaaacatataagtgaga |
50331959 |
T |
|
| Q |
246 |
tgact |
250 |
Q |
| |
|
||||| |
|
|
| T |
50331958 |
tgact |
50331954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 50332170 - 50332063
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgtt-cgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||| ||||| ||| | ||||| |||||| ||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
50332170 |
tcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatatcatatctgcttcaaca |
50332071 |
T |
|
| Q |
100 |
tttttggg |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
50332070 |
tttttggg |
50332063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 1599549 - 1599773
Alignment:
| Q |
25 |
tttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcg |
123 |
Q |
| |
|
||||| |||||| |||| |||||||||| ||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | | |
|
|
| T |
1599549 |
tttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaagtggtatg |
1599648 |
T |
|
| Q |
124 |
tggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagat |
223 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
1599649 |
tggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgc--aatagtagat |
1599746 |
T |
|
| Q |
224 |
attgaacaatatataagtgagatgact |
250 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
1599747 |
gttgagaaacatataagtgagatgact |
1599773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 26894788 - 26894957
Alignment:
| Q |
42 |
tcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagac |
141 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||| |||||| |||| |||||||||||||| |||||| ||||||| ||| ||||||||||| ||||| |
|
|
| T |
26894788 |
tcacacaactgttggctaccccataagtcccaataatgatataatatccacttcaacattttaggggagtggaagtggttcatggtggtggattgcagac |
26894887 |
T |
|
| Q |
142 |
acgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgc |
211 |
Q |
| |
|
||| | |||||||| ||||| ||||||||||||| | |||| |||| |||||||||||||||| |||| |
|
|
| T |
26894888 |
acggatagtctcatacttaatggagagatgttaatatatcaagtgtgatttaaaataacacattggatgc |
26894957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 33489 - 33240
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcg--aatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaa |
97 |
Q |
| |
|
||||||||||||||||| ||| | ||||| |||||| || | |||||||||||||| |||||| |||||| ||| | |||||||||| | |||||| |
|
|
| T |
33489 |
tcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgcttcaa |
33391 |
T |
|
| Q |
98 |
catttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaat |
197 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
33390 |
catttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaat |
33291 |
T |
|
| Q |
198 |
aacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
33290 |
aacacattgaatgc--aatagtagatgttgaacaacatataagtgagatgact |
33240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5789116 - 5788867
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcg--aatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaa |
97 |
Q |
| |
|
||||||||||||||||| ||| | ||||| |||||| || | |||||||||||||| |||||| |||||| ||| | |||||||||| | |||||| |
|
|
| T |
5789116 |
tcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctcccca-taagtctcaatgttgatatcatacccgcttcaa |
5789018 |
T |
|
| Q |
98 |
catttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaat |
197 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
5789017 |
catttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaat |
5788918 |
T |
|
| Q |
198 |
aacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
5788917 |
aacacattgaatgc--aatagtagatgttgaacaacatataagtgagatgact |
5788867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 3395695 - 3395448
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||| ||||||||||| ||| | ||||| ||| || |||| ||||||||||||||||||||| ||||| |||| ||||||||||||| | |||||||| |
|
|
| T |
3395695 |
tcattttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtctcccca-taagttccaatggtgatatcatatccgcttcaaca |
3395597 |
T |
|
| Q |
100 |
tttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataa |
199 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3395596 |
tttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataa |
3395497 |
T |
|
| Q |
200 |
cacattgaatgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
||| |||||||| ||| ||||| |||| || ||||||||||||||||| |
|
|
| T |
3395496 |
cactttgaatgc--aatagtagatgttgagaaacatataagtgagatgact |
3395448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41754617 - 41754529
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatat |
88 |
Q |
| |
|
||||| ||||| ||||| ||| | ||| | |||||| |||| ||||||||| |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
41754617 |
tcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatatcatat |
41754529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 33014118 - 33014000
Alignment:
| Q |
1 |
tcattctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaaca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
33014118 |
tcattctcacttgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccatgtaagtcccaatggtgatatcatatacgcttcaaca |
33014019 |
T |
|
| Q |
100 |
tttttggggagcggaagtg |
118 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33014018 |
tttttggggagcggaagtg |
33014000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 38016166 - 38015928
Alignment:
| Q |
9 |
acttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttggg |
107 |
Q |
| |
|
||||||||| ||| | ||||| |||| | |||| ||||||||||| || |||||| |||||||||| || |||||||||| | |||||||||||||| | |
|
|
| T |
38016166 |
acttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctcccca-taagtcccaatggcgatatcatatccgcttcaacatttttgtg |
38016068 |
T |
|
| Q |
108 |
gagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacattga |
207 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||||| || |||||||| || || |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
38016067 |
gaacggaagtggttcgtggtggtggatcgtggacac-aaaagtctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattga |
38015969 |
T |
|
| Q |
208 |
atgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
|||| ||| ||||| |||| ||| ||||||||||||||||| |
|
|
| T |
38015968 |
atgc--aatagtagatgttgagcaacatataagtgagatgact |
38015928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 294
Target Start/End: Complemental strand, 33013989 - 33013852
Alignment:
| Q |
157 |
tttaattgagagatgttaatgtgtcaactgtggattaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgacttgtaat |
256 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||| |||| |
|
|
| T |
33013989 |
tttaattgagagatgctaatgtgtcaagtgtgggttaaaataacacattgaatttcatataatatatattgaacaacatattagtgagatgactcataat |
33013890 |
T |
|
| Q |
257 |
gtcataagattatggatgtaactttgatgtccatctca |
294 |
Q |
| |
|
||| ||||| ||||||||| | ||||||| |||||| |
|
|
| T |
33013889 |
gtcttaagaacttggatgtaattgtgatgtcaatctca |
33013852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 43387335 - 43387132
Alignment:
| Q |
7 |
tcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttttg |
105 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| || | |||||||||||||| ||||| |||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
43387335 |
tcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggatcccca-taagtcccaatggtgatatcatatccgtttcaacatttttt |
43387237 |
T |
|
| Q |
106 |
gggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaactgtggattaaaataacacatt |
205 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| |||||||| |||||||| | |||| |||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
43387236 |
gggagcaaaagtggttcgtggtg-tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacatt |
43387138 |
T |
|
| Q |
206 |
gaatgc |
211 |
Q |
| |
|
|||||| |
|
|
| T |
43387137 |
gaatgc |
43387132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 14373 - 14503
Alignment:
| Q |
5 |
tctcacttgtgtggttgttttttctacaatgt-tcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatatcatatacacttcaacatttt |
103 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| | || |||||||||||||| |||| || |||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
14373 |
tctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatggtgatatcatatccgcttcaacatttt |
14472 |
T |
|
| Q |
104 |
tggggagcggaagtgcttcgtggtggtggat |
134 |
Q |
| |
|
|| |||||||| ||| |||||| |||||||| |
|
|
| T |
14473 |
tgaggagcggatgtggttcgtgatggtggat |
14503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 14538 - 14595
Alignment:
| Q |
191 |
ttaaaataacacattgaatgccatataatagatattgaacaatatataagtgagatgact |
250 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
14538 |
ttaaaataacacattgaatgc--aatagtagatgttgaacaacatataaatgagatgact |
14595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 50384 - 50251
Alignment:
| Q |
78 |
tgatatcatatacacttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatg |
177 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||||| |||||| ||||| |||||||||| | |||| |||||||| | ||||| |||||| ||||| |
|
|
| T |
50384 |
tgatatcatatccgcttcaacgttttttgggagcagaagtggttcgtagtggtggatcgcggacatagagagtctcgtacttaatggagagaatttaata |
50285 |
T |
|
| Q |
178 |
tgtcaactgtggattaaaataacacattgaatgc |
211 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||| |
|
|
| T |
50284 |
tgtcaagtgtcagttaaaataacacgttgaatgc |
50251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 17510369 - 17510279
Alignment:
| Q |
93 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
183 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17510369 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17510279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 17542845 - 17542935
Alignment:
| Q |
93 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
183 |
Q |
| |
|
||||||||||| |||||| || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17542845 |
ttcaacattttaggggagtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17542935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 17474885 - 17474795
Alignment:
| Q |
93 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
183 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17474885 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17474795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 17578329 - 17578419
Alignment:
| Q |
93 |
ttcaacatttttggggagcggaagtgcttcgtggtggtggatcacagacacgaagagtctcatgtttaattgagagatgttaatgtgtcaa |
183 |
Q |
| |
|
||||||||||| |||| | || |||| ||| ||||||| |||||||| ||| |||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
17578329 |
ttcaacattttaggggtgtgggagtggttcttggtggtcgatcacaggcacaaagagtctgacacttactggagagatgttaatgtgtcaa |
17578419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University