View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_138 (Length: 299)
Name: NF10049A_low_138
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_138 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 5474365 - 5474075
Alignment:
| Q |
9 |
agatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggtagttctcttctttgcatgactcttcctttttagttgtt |
108 |
Q |
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| T |
5474365 |
agatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggtagttctcttctttgcatgactcttccttttgagttgtt |
5474266 |
T |
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| Q |
109 |
gttctgccttgattgccttgatggattgatgcaccaattcttctatctccatgtaatgatgcaactccaacacatcacttatgtcatagtttagaccagg |
208 |
Q |
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| T |
5474265 |
gttctgccttgattgccttgatggattcatgcaccaattcttctatctccatgtaatgatgcaactccaccacatcacttatgtcatagtttagaccagg |
5474166 |
T |
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| Q |
209 |
aacaaatttggccatggttgcttcattttcttcctccacgttgaccctttatttcttccattaagtagagaacaaagatgatgagtgtaga |
299 |
Q |
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| T |
5474165 |
aagaaatttggccatggttgcttcattttcttcctccacgttgaccctttatttcttccattaagtagagaacaaagatgatgagtgtaga |
5474075 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 14577417 - 14577481
Alignment:
| Q |
183 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
247 |
Q |
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| T |
14577417 |
tcactaatgtcatgatttagaccatgaagaaatctggccatggttgcttcattgtcttcctccac |
14577481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 20742489 - 20742425
Alignment:
| Q |
183 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
247 |
Q |
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| T |
20742489 |
tcactaatgtcatgatttagaccatgaagaaatctagccatggttgcttcattgtcttcctccac |
20742425 |
T |
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