View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_139 (Length: 299)

Name: NF10049A_low_139
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_139
NF10049A_low_139
[»] chr6 (5 HSPs)
chr6 (7-180)||(33630940-33631114)
chr6 (207-284)||(4792842-4792919)
chr6 (207-284)||(29873623-29873700)
chr6 (207-284)||(2017931-2018008)
chr6 (222-284)||(22516903-22516965)
[»] chr7 (3 HSPs)
chr7 (207-284)||(30504214-30504291)
chr7 (207-284)||(24279026-24279103)
chr7 (207-284)||(42437430-42437507)
[»] chr3 (9 HSPs)
chr3 (207-284)||(55094048-55094125)
chr3 (206-284)||(5635908-5635986)
chr3 (207-284)||(2182202-2182279)
chr3 (207-284)||(51225501-51225578)
chr3 (210-284)||(32771512-32771586)
chr3 (207-284)||(17257143-17257220)
chr3 (207-269)||(50380643-50380705)
chr3 (207-281)||(35494604-35494678)
chr3 (207-270)||(36316754-36316817)
[»] chr2 (6 HSPs)
chr2 (207-284)||(11364404-11364481)
chr2 (207-283)||(23048845-23048921)
chr2 (207-284)||(8667035-8667112)
chr2 (212-284)||(43890687-43890759)
chr2 (207-284)||(44077953-44078030)
chr2 (225-284)||(21632369-21632428)
[»] chr1 (7 HSPs)
chr1 (207-287)||(4475660-4475740)
chr1 (207-284)||(50503984-50504061)
chr1 (210-284)||(21259462-21259536)
chr1 (210-284)||(50877294-50877368)
chr1 (207-284)||(49695938-49696015)
chr1 (207-284)||(51548931-51549008)
chr1 (207-240)||(39277540-39277573)
[»] chr4 (8 HSPs)
chr4 (207-281)||(51543489-51543563)
chr4 (212-284)||(53060935-53061007)
chr4 (207-284)||(6033338-6033415)
chr4 (207-284)||(8143839-8143916)
chr4 (207-284)||(33167527-33167604)
chr4 (210-284)||(29775872-29775946)
chr4 (207-284)||(38829068-38829147)
chr4 (222-284)||(1139660-1139722)
[»] scaffold0854 (1 HSPs)
scaffold0854 (207-284)||(2798-2875)
[»] chr8 (5 HSPs)
chr8 (207-284)||(8348512-8348589)
chr8 (207-284)||(45309079-45309156)
chr8 (207-284)||(12279750-12279827)
chr8 (212-284)||(42074716-42074788)
chr8 (207-284)||(8951897-8951977)
[»] chr5 (4 HSPs)
chr5 (211-284)||(4887968-4888041)
chr5 (207-284)||(38163135-38163212)
chr5 (207-284)||(38973971-38974048)
chr5 (212-284)||(26365492-26365564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (223-287)||(200903-200967)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 33631114 - 33630940
Alignment:
Q  7 gatatcacaaaacaaggttttattttgggaaactttagagcgatctataggttatgcctgagttatacttatggttgacagtataatatagtgtatatct 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  33631114 gatatcacaaaacaaggttttattttgggaaactttagagtgatctataggttatgcctgagttatacttatggttgacagtatattatagtgtatattt 33631015  T
Q  107 taaaattgtgtacttattatttgggtgtaaaacaagtggtctctatgttcatttgtag-agactaatctctttga 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33631014 taaaattgtgtacttattatttgggagtaaaacaagtggtctctatgttcatttgtagcagactaatctctttga 33630940  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 4792842 - 4792919
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| || ||||||||||||||    
T  4792842 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 4792919  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 29873623 - 29873700
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  29873623 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 29873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 2018008 - 2017931
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||| |||||| ||||||||||||||    
T  2018008 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtagacagtatgtgattgttctgat 2017931  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 22516965 - 22516903
Alignment:
Q  222 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||| || ||||||||||||||    
T  22516965 gaaatataaatagaaaatatcattatacttttaataatgtaaacaatatgtgattgttctgat 22516903  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 30504214 - 30504291
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  30504214 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 30504291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 24279103 - 24279026
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  24279103 aacagagttgatgaggaaatataaatataaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 24279026  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 42437507 - 42437430
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| || |||||||||||    
T  42437507 aacatagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtcattgttctgat 42437430  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 55094125 - 55094048
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  55094125 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 55094048  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 5635908 - 5635986
Alignment:
Q  206 aaacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| || ||||||||||||||    
T  5635908 aaacagagttgatgatggaatataaatagaaactaccattatacttttaataatgtaaacaatatgtgattgttctgat 5635986  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 2182279 - 2182202
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  2182279 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 2182202  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 51225501 - 51225578
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||| ||||||||||||||    
T  51225501 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 51225578  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 32771586 - 32771512
Alignment:
Q  210 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| || ||||||||||||||    
T  32771586 agagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 32771512  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 17257143 - 17257220
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||  |||||||||||||    
T  17257143 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacattatttgattgttctgat 17257220  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 50380643 - 50380705
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagta 269  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||    
T  50380643 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagta 50380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 35494678 - 35494604
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttct 281  Q
    ||||||| |||||| ||||||||||| |||||||  ||||||||||||| |||||||| |||| |||||||||||    
T  35494678 aacagagatgatgaggaaatataaattgaaactatcattatacttttaataatgtaaatagtatgtgattgttct 35494604  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 36316817 - 36316754
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtac 270  Q
    |||||||||||||| |||||||||||| ||| ||  ||||||||||||| ||||||||||||||    
T  36316817 aacagagttgatgaggaaatataaatataaagtatcattatacttttaataatgtaaacagtac 36316754  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 11364404 - 11364481
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  11364404 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 11364481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 23048845 - 23048921
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctga 283  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||||    
T  23048845 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctga 23048921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 8667112 - 8667035
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||| ||||||||| ||||    
T  8667112 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttatgat 8667035  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 43890687 - 43890759
Alignment:
Q  212 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||| ||||||||||||||    
T  43890687 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 43890759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 44078030 - 44077953
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| |||||||||  ||||||||||||||||||  ||||||||||| | |||||||||| || ||||||||||||||    
T  44078030 aacatagttgatgagaaaatataaatagaaactatcattatacttttgataatgtaaacaatatgtgattgttctgat 44077953  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 21632369 - 21632428
Alignment:
Q  225 atataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||| ||||||||| ||||    
T  21632369 atataaatagaaaatatcattatacttttaataatgtaaacagtatgtgattgttttgat 21632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 4475740 - 4475660
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgatatt 287  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| || |||||||||||||||||    
T  4475740 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatatt 4475660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 50503984 - 50504061
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  50503984 aacagagttgatgagaaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 50504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 21259536 - 21259462
Alignment:
Q  210 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  21259536 agagttgatgaggaaatataaaaagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 21259462  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 50877368 - 50877294
Alignment:
Q  210 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||  |||||||||||| ||||||||||||||    
T  50877368 agagttgatgaggaaatataaatagaaactatcattatacttttaatgatgtaaacagtatgtgattgttctgat 50877294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 49695938 - 49696015
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||||||  |||||||||||||||||   ||||||||||||| ||||||||||||| ||||||||||||||    
T  49695938 aacagagttgatgagaaaatataaatagaaactgtcattatacttttaataatgtaaacagtatgtgattgttctgat 49696015  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 51548931 - 51549008
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| || | ||||||||||||    
T  51548931 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgcgattgttctgat 51549008  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 39277540 - 39277573
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaacta 240  Q
    |||||||||||||| |||||||||||||||||||    
T  39277540 aacagagttgatgaggaaatataaatagaaacta 39277573  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 51543489 - 51543563
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttct 281  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| |||||||||||    
T  51543489 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttct 51543563  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 53060935 - 53061007
Alignment:
Q  212 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  53060935 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 53061007  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 6033415 - 6033338
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||| ||||||||||||||    
T  6033415 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 6033338  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 8143916 - 8143839
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||| | |||||||||||||||||||  ||||||||||||| |||||||||| || ||||||||||||||    
T  8143916 aacagagttgatcaggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattgttctgat 8143839  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 33167604 - 33167527
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |||| ||||||||||||||    
T  33167604 aacacagttgatgaggaaatataaatagaaactattattatacttttaataatgtaaatagtatgtgattgttctgat 33167527  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 29775872 - 29775946
Alignment:
Q  210 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||| |||| |||||||| ||||||||||||||    
T  29775872 agagttgatgaggaaatataaatataaactatcattatacttttaataatgcaaacagtatgtgattgttctgat 29775946  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 38829068 - 38829147
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaaca--gtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||   || ||||||||||||||    
T  38829068 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatatgtgattgttctgat 38829147  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 1139660 - 1139722
Alignment:
Q  222 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| || ||||||| ||||||    
T  1139660 gaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattggtctgat 1139722  T

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Target: scaffold0854 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 2875 - 2798
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| || ||||||||||||||    
T  2875 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgat 2798  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 8348589 - 8348512
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||| ||||||| |||||||||||||||||||  |||||||||||||  |||||||||||| ||||||||||||||    
T  8348589 aacagaattgatgaggaaatataaatagaaactatcattatacttttaattatgtaaacagtatgtgattgttctgat 8348512  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 45309156 - 45309079
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||  ||||| ||||||| ||||||||||||| ||||||||||||||    
T  45309156 aacatagttgatgaggaaatataaatagaaactatcattatgcttttaataatgtaaacagtatgtgattgttctgat 45309079  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 12279827 - 12279750
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||| |||| ||||||||||||||    
T  12279827 aacaaagttgatgaggaaatgtaaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgat 12279750  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 42074788 - 42074716
Alignment:
Q  212 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||   ||||||||||||    
T  42074788 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatacgattgttctgat 42074716  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 8951897 - 8951977
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaact---acgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| ||||||||||||||||||   |  ||||||||||||| ||||||||||||| ||||||||||||||    
T  8951897 aacatagttgatgaggaaatataaatagaaactatcataattatacttttaataatgtaaacagtatgtgattgttctgat 8951977  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 4887968 - 4888041
Alignment:
Q  211 gagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||| || |||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  4887968 gagttgacgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgat 4888041  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 38163212 - 38163135
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||||| |||||||||| || ||||||||||||||    
T  38163212 aacagagttgatgaggaaatataaatagaaactgtcattatacttttaataatgtaaacaatatgtgattgttctgat 38163135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 38973971 - 38974048
Alignment:
Q  207 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    |||| ||||||||| |||||||||||||||||||   |||||||||||| ||||||||||||| ||||||||||||||    
T  38973971 aacaaagttgatgaggaaatataaatagaaactatccttatacttttaataatgtaaacagtatgtgattgttctgat 38974048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 26365564 - 26365492
Alignment:
Q  212 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgat 284  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||| |||||||| ||||||||||||||    
T  26365564 agttgatgaggaaatataaatagaaactatcattatacttttaataatgaaaacagtatgtgattgttctgat 26365492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 200967 - 200903
Alignment:
Q  223 aaatataaatagaaactacgattatacttttaacaatgtaaacagtacgtgattgttctgatatt 287  Q
    ||||| ||||||||||||  | ||||||||||| |||||||| |||| |||||||||||||||||    
T  200967 aaatagaaatagaaactatcactatacttttaataatgtaaatagtatgtgattgttctgatatt 200903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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