View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_142 (Length: 296)
Name: NF10049A_low_142
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_142 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 12634908 - 12635127
Alignment:
| Q |
20 |
attataagttctaaaatctgaacaatctagaccttgttgcacatgtatcaatcaatgtaacaggtacgtgtaaaaacctgcgattttacagtgattttat |
119 |
Q |
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| T |
12634908 |
attataagttctaaaatctgaacaatctagaccttgttgcacatgtatcaatcaatgtaacaggtacgtgtaaaaacctgcgattttacagtgattttat |
12635007 |
T |
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| Q |
120 |
gcgattttgtggcgttcttaccactattttgcatgttttactattctggtatcgatttggatcgaagagggtgagcaaatgggttcgacaacaatgttag |
219 |
Q |
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| T |
12635008 |
gcgattttgcggcattcttaccactattttgcatgttttactattctggtatcgatttggatcgaagagggtgagcaaatgggttcgacaacaatgttag |
12635107 |
T |
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| Q |
220 |
agacccccttttggcctacc |
239 |
Q |
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| T |
12635108 |
agacccccttttggcctacc |
12635127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 35947815 - 35947926
Alignment:
| Q |
86 |
cgtgtaaaaacctgcgattttacagtgattttatgcgattttgtggcgttcttaccactattttgcatgttttactattctggtatcgatttggatcgaa |
185 |
Q |
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| T |
35947815 |
cgtgtaaaaacctacgattttccaacgatttcatgtgattttgttgggaccttaccacaattttgcatttttttttattctactatcga-ttggattgaa |
35947913 |
T |
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| Q |
186 |
gagggtgagcaaa |
198 |
Q |
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| T |
35947914 |
gagggtgagcaaa |
35947926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 35940971 - 35940929
Alignment:
| Q |
18 |
caattataagttctaaaatctgaacaatctagaccttgttgca |
60 |
Q |
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| T |
35940971 |
caattataatttctaaaatctgaacaatctagttcttgttgca |
35940929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 52519572 - 52519527
Alignment:
| Q |
113 |
attttatgcgattttgtggcgttcttaccactattttgcatgtttt |
158 |
Q |
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| T |
52519572 |
attttatgcgattttgctgcgatcttaccacgattttgcatgtttt |
52519527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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