View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_143 (Length: 296)
Name: NF10049A_low_143
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8880479 - 8880198
Alignment:
| Q |
1 |
aatttgttatttttagacaatgagtcgtgtttggaagtgaattctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaa |
100 |
Q |
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| T |
8880479 |
aattttttattgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt-agcttgtgttctgcagctaacaaa |
8880381 |
T |
|
| Q |
101 |
ctcatagttggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatct |
200 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8880380 |
cttatagttggatttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
|
| Q |
201 |
cagactattgattctgaaagtttaagtgtccaaaactccgttctgtttgctggtccattgactaccacctccattagtaccaa |
283 |
Q |
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| T |
8880280 |
cagactattgattctgaaagtttaagtgtccaaaactccgttctgttagctggtccattgactaccacctccattagtaccaa |
8880198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 8884155 - 8883998
Alignment:
| Q |
126 |
tatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatctcagactattgattctgaaagtttaa |
225 |
Q |
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| T |
8884155 |
tatacatcctttgccggtttatttccattgctttcgagcggactactgccattacttacggttgaagaaatatctcagactattgactctgaaagtttga |
8884056 |
T |
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| Q |
226 |
gtgtccaaaactccgttctgtttgctggtccattgactaccacctccattagtaccaa |
283 |
Q |
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| T |
8884055 |
ctgtccaaaactctgttctgtttgctggtccattgactaccacctccattagtaccaa |
8883998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 45073608 - 45073406
Alignment:
| Q |
13 |
ttagacaatgagtcgtgtttggaagtgaa-ttctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagttgg |
111 |
Q |
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||||||||||| | ||||||||||| ||| || |||| |||||||||||||| | |||||||| || || ||||||||||||||||||||||| ||||| |
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| T |
45073608 |
ttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt--agtttgtgttctgcagctaacaaactcatggttgg |
45073511 |
T |
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| Q |
112 |
atttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatctcagactattga |
211 |
Q |
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| T |
45073510 |
atttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattga |
45073411 |
T |
|
| Q |
212 |
ttctg |
216 |
Q |
| |
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||||| |
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| T |
45073410 |
ttctg |
45073406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 45073406 - 45073371
Alignment:
| Q |
240 |
gttctgtttgctggtccattgactaccacctccatt |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45073406 |
gttctgtttgctggtccattgactaccacctccatt |
45073371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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