View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_144 (Length: 295)

Name: NF10049A_low_144
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_144
NF10049A_low_144
[»] chr7 (1 HSPs)
chr7 (5-291)||(28550887-28551173)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 28551173 - 28550887
Alignment:
Q  5 taaattatactcgagtcatcgtaatctattgaaccgtatgaatatctcgtgtaagattatcacctgtgaaaagagatcatgtcttatgtgcaagaatgag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28551173 taaattatactcgagtcatcgtaatctattgaaccgtatgaatatctcgtgtaagattatcacctgtgaaaagagatcatgtcttatgtgcaagaatgag 28551074  T
Q  105 tctacgaacgatccaacaagacaaccatctgggatcttagaggaaattcgcaattggcgtgaagatgagatagagtctctagcacattaattcagtttta 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28551073 tctacgaacgatccaacaagacaaccatctgggatcttagaggaaattcgcaattggcgtgaagatgagatagattctctagcacattaattcagtttta 28550974  T
Q  205 ttgaaatgtgtttaatatggcatgaaccttgtgatttttaaacatcaataatacttcactttcctttttgttgggacggtgcatgtg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28550973 ttgaaatgtgtttaatatggcatgaaccttgtgatttttaaacatcaataatacttcactttcctttttgttgggacggtgcatgtg 28550887  T

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