View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_148 (Length: 291)
Name: NF10049A_low_148
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_148 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 18787085 - 18786995
Alignment:
| Q |
99 |
gtttaatagcatacaatacaatatcttcttgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgct |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18787085 |
gtttaatagcatacaatacaatatcttcatgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgct |
18786995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 18786949 - 18786899
Alignment:
| Q |
235 |
cttccttaattcttacacaatatatatgcagaagctgtacatattcttcga |
285 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18786949 |
cttccttatttctaacacaatatatattcagaagctgtacatattgttcga |
18786899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 18787179 - 18787149
Alignment:
| Q |
7 |
aacaggatgctcgtatttgacacagctgcag |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18787179 |
aacaggatgctcgtatttgacacagctgcag |
18787149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University