View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_15 (Length: 458)
Name: NF10049A_low_15
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 46 - 444
Target Start/End: Original strand, 1141585 - 1141986
Alignment:
| Q |
46 |
cattttcaatccacacataatacataacaatacaagtgtcttaggaatacaccaataccaccccaatatgggtccaaacaatttgagcaaaacactacct |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
1141585 |
cattttcaatccacacataatacataacaatacaagtgccttaggaataaaccaataccaccccaatatgggtccaaacaatttgagcaaaaccctccct |
1141684 |
T |
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| Q |
146 |
gcaatatagccacacatatt---gcaactacctattaatttgttacattaaaatcaatagaggatgtcacacacagcaacctagtagtgttttaaaatag |
242 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141685 |
gcaatatagccacacatattattgcaactacctattaatttgatacattaaaatcaatagaggatgtcacacacagcaacctagtagtgttttaaaatag |
1141784 |
T |
|
| Q |
243 |
aaaatcccatgaccaaaacagataataggagactataagatgatgatccagcagatgatggagtcagatcagagcggccacttccgggcgttgcagatgg |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141785 |
aaaatcccatgaccaaaacagataataggagactataagatgatgatccagcagatgatggagtcagatcagagcggccacttccgggcgttgcagatgg |
1141884 |
T |
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| Q |
343 |
aatatcagtgttcgctgatggagataatggattggttgtctcaggctgtggtgacagagaaggtgtcactggtgagggaagtatagaagaagctgctcaa |
442 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141885 |
aatatcagggttcgctgatggagataatggattggttgtctcaggctgtggtgacagagaaggtgtcactggtgagggaagtatagaagaagctgctcaa |
1141984 |
T |
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| Q |
443 |
ag |
444 |
Q |
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|| |
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| T |
1141985 |
ag |
1141986 |
T |
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