View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_150 (Length: 290)
Name: NF10049A_low_150
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_150 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 11340207 - 11340507
Alignment:
| Q |
14 |
agataagacgtgagcagcaaaaacaaagacctattttttgaaggatctaaagtttatttgttttcattagatatttgtgtctctcaccctatgtcgtcta |
113 |
Q |
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| T |
11340207 |
agataagacgtgagcagcaaaaacaaagacctattttttgaaggatctaaagtttatttgttttcattagatatttgtgtctctcaccctatgtcgtcta |
11340306 |
T |
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| Q |
114 |
ttatatggg------------aaagtccttaagttgttttccactcatgtaaaatataggtttcattaatttgcactaatctgatacacacatttccaca |
201 |
Q |
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| T |
11340307 |
atatatgggacttttgctggaaaagtccttaagttgttttccactcatgtaaaatataggtttcattaatttgcactaatctgatacacacatttccaca |
11340406 |
T |
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| Q |
202 |
cttctcaacattgttaaaaatg------------ttgttaaggaacaatgttggtggcttgaaccccaatttagtatagtttgttcttacctacaaagtc |
289 |
Q |
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| T |
11340407 |
cttctcaacattgttaaaaatgttgttcaaaatattgttcaggaacaatgttggtggcttgaaccccaatttagtatagtttgttcttacctacaaagtc |
11340506 |
T |
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| Q |
290 |
a |
290 |
Q |
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| T |
11340507 |
a |
11340507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 11498226 - 11498526
Alignment:
| Q |
14 |
agataagacgtgagcagcaaaaacaaagacctattttttgaaggatctaaagtttatttgttttcattagatatttgtgtctctcaccctatgtcgtcta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11498226 |
agataagacgtgagcagcaaaaacaaagacctattttttgaaggatctaaagtttatttgttttcattagatatttgtgtctctcaccctatgtcgtcta |
11498325 |
T |
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| Q |
114 |
ttatatggg------------aaagtccttaagttgttttccactcatgtaaaatataggtttcattaatttgcactaatctgatacacacatttccaca |
201 |
Q |
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| T |
11498326 |
atatatgggacttttgctggaaaagtccttaagttgttttccactcatgtaaaatataggtttcattaatttgcactaatctgatacacacatttccaca |
11498425 |
T |
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| Q |
202 |
cttctcaacattgttaaaaatg------------ttgttaaggaacaatgttggtggcttgaaccccaatttagtatagtttgttcttacctacaaagtc |
289 |
Q |
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| T |
11498426 |
cttctcaacattgttaaaaatgttgttcaaaatattgttcaggaacaatgttggtggcttgaaccccaatttagtatagtttgttcttacctacaaagtc |
11498525 |
T |
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| Q |
290 |
a |
290 |
Q |
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| T |
11498526 |
a |
11498526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 283
Target Start/End: Complemental strand, 32197967 - 32197854
Alignment:
| Q |
170 |
atttgcactaatctgatacacacatttccacacttctcaacattgttaaaaatgttgttaaggaacaatgttggtggcttgaaccccaatttagtatagt |
269 |
Q |
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|||| ||||||||||||||| | || || ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||| ||||| |
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| T |
32197967 |
atttacactaatctgatacatcctttgccgcacttctcaacattgttaaaagagttgttcaggaacaatgttggtggcttgaaccctcatctagaatagt |
32197868 |
T |
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| Q |
270 |
ttgttcttacctac |
283 |
Q |
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|||| ||||||||| |
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| T |
32197867 |
ttgtgcttacctac |
32197854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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