View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_152 (Length: 289)

Name: NF10049A_low_152
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_152
NF10049A_low_152
[»] chr3 (7 HSPs)
chr3 (6-269)||(20981960-20982223)
chr3 (7-222)||(20995120-20995330)
chr3 (19-145)||(20948576-20948699)
chr3 (220-289)||(20982654-20982723)
chr3 (233-289)||(20995550-20995606)
chr3 (234-269)||(22312420-22312455)
chr3 (232-274)||(20982795-20982837)
[»] chr5 (3 HSPs)
chr5 (13-80)||(38142201-38142268)
chr5 (5-63)||(7976851-7976909)
chr5 (237-269)||(8402229-8402261)
[»] chr7 (2 HSPs)
chr7 (233-269)||(23972400-23972436)
chr7 (232-269)||(5473275-5473312)
[»] chr4 (3 HSPs)
chr4 (234-274)||(36165209-36165249)
chr4 (8-88)||(3978048-3978128)
chr4 (233-269)||(23564165-23564201)
[»] scaffold0549 (2 HSPs)
scaffold0549 (232-266)||(1062-1096)
scaffold0549 (232-266)||(3152-3186)
[»] chr6 (2 HSPs)
chr6 (232-266)||(11339963-11339997)
chr6 (232-269)||(6728576-6728613)
[»] chr1 (1 HSPs)
chr1 (232-269)||(30602339-30602376)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 20981960 - 20982223
Alignment:
Q  6 gtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20981960 gtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttctt 20982059  T
Q  106 cgtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20982060 cgtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatc 20982159  T
Q  206 tcatcccaaaagctagcaacgtaggtcaaataacaaactacaaacaattttaaaaccaacttca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20982160 tcatcccaaaagctagcaacgtaggtcaaataacaaactacaaacaattttaaaaccaacttca 20982223  T

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Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 20995120 - 20995330
Alignment:
Q  7 tttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995120 tttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttc 20995219  T
Q  107 gtcagctgcggcggaatcgttatctcatccgctgaattagacatttggatatatacctagtaatcataaaaggttgaaactgttaaatgtgcttcgatct 206  Q
    ||| || ||||||||||| | ||||||||| |||||||||||||||||  ||||||||||||     ||||||||||||| ||||||||||||| ||| |    
T  20995220 gtcggcggcggcggaatcatgatctcatcctctgaattagacatttgg--atatacctagta---gaaaaaggttgaaaccgttaaatgtgcttggattt 20995314  T
Q  207 catcccaaaagctagc 222  Q
    ||| ||||||| ||||    
T  20995315 catgccaaaagttagc 20995330  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 20948699 - 20948576
Alignment:
Q  19 aaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctgctgagcttaactttcttcgtcagctgcggc 118  Q
    |||||||||||||| ||||||||| |||||||| || |||||  |||||||||| ||||| || ||   ||||||||||| |||||||||| |  ||||     
T  20948699 aaaggagagaatgtaaaggataacgctttcgggtaaatcactcggtctatcttcgttttcgcaatc---gctgagcttaattttcttcgtcggtggcggt 20948603  T
Q  119 ggaatcgttatctcatccgctgaatta 145  Q
    |||||||||||||| ||  ||||||||    
T  20948602 ggaatcgttatctcgtcatctgaatta 20948576  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 20982654 - 20982723
Alignment:
Q  220 agcaacgtaggtcaaataacaaactacaaacaattttaaaaccaacttcaccatcttccaaaccttttta 289  Q
    ||||| |||||  |||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||    
T  20982654 agcaatgtaggataaataacaaactacaaacaactttaaaaccaacttcaacattttccaaacctattta 20982723  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 20995550 - 20995606
Alignment:
Q  233 aaataacaaactacaaacaattttaaaaccaacttcaccatcttccaaaccttttta 289  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||| ||| ||||    
T  20995550 aaataacaaactacaaacaactttaaaaccaacttcaacattttccaagcctattta 20995606  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 22312455 - 22312420
Alignment:
Q  234 aataacaaactacaaacaattttaaaaccaacttca 269  Q
    |||||||||||||||| |||||||||||||||||||    
T  22312455 aataacaaactacaaataattttaaaaccaacttca 22312420  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 20982837 - 20982795
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaacttcaccatc 274  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||    
T  20982837 caaataacaaactacaaacaactttaaaactaacttcaacatc 20982795  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 38142201 - 38142268
Alignment:
Q  13 gttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcac 80  Q
    ||||| ||||||||| ||||||||||||||||  || || ||||| |||||||| |||||||||||||    
T  38142201 gttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtcttcattttcac 38142268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 7976851 - 7976909
Alignment:
Q  5 agtttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgag 63  Q
    ||||||| ||||| |||||||||||||||||||||||  | |||||| ||||| |||||    
T  7976851 agtttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgctgag 7976909  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 8402229 - 8402261
Alignment:
Q  237 aacaaactacaaacaattttaaaaccaacttca 269  Q
    |||||||||||||||| ||||||||||||||||    
T  8402229 aacaaactacaaacaactttaaaaccaacttca 8402261  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 23972436 - 23972400
Alignment:
Q  233 aaataacaaactacaaacaattttaaaaccaacttca 269  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23972436 aaataacaaactacaaacaattttaaaatcaacttca 23972400  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 5473312 - 5473275
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaacttca 269  Q
    ||||||||||||||||||||| || |||||||||||||    
T  5473312 caaataacaaactacaaacaacttcaaaaccaacttca 5473275  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 36165209 - 36165249
Alignment:
Q  234 aataacaaactacaaacaattttaaaaccaacttcaccatc 274  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  36165209 aataacaaactacaaacaatttcaaaaccaacttcaacatc 36165249  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 3978128 - 3978048
Alignment:
Q  8 ttggtgttcagaaaggagagaatgtgaaggataacactttcgggcaagtcactgagtctatcttcattttcacactcgctg 88  Q
    |||||||| | ||| ||||| |||||||| ||||  ||||| || ||||| |||||||| ||||||||||| | |||||||    
T  3978128 ttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtctgtcttcattttcgctctcgctg 3978048  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 23564165 - 23564201
Alignment:
Q  233 aaataacaaactacaaacaattttaaaaccaacttca 269  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  23564165 aaataacaaactacaatcaactttaaaaccaacttca 23564201  T

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Target: scaffold0549 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 1096 - 1062
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaact 266  Q
    ||||||||||||||||||||| |||||||||||||    
T  1096 caaataacaaactacaaacaactttaaaaccaact 1062  T

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Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 3186 - 3152
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaact 266  Q
    ||||||||||||||||||||| |||||||||||||    
T  3186 caaataacaaactacaaacaactttaaaaccaact 3152  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 11339997 - 11339963
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaact 266  Q
    ||||||||||||||||||||| |||||||||||||    
T  11339997 caaataacaaactacaaacaactttaaaaccaact 11339963  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 6728613 - 6728576
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaacttca 269  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  6728613 caaataacaaactataaacaactttaaaaccaacttca 6728576  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 30602376 - 30602339
Alignment:
Q  232 caaataacaaactacaaacaattttaaaaccaacttca 269  Q
    ||||||||||||||||||||| || |||||||||||||    
T  30602376 caaataacaaactacaaacaacttcaaaaccaacttca 30602339  T

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