View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_162 (Length: 284)

Name: NF10049A_low_162
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_162
NF10049A_low_162
[»] scaffold0049 (1 HSPs)
scaffold0049 (9-264)||(58137-58383)
[»] chr1 (20 HSPs)
chr1 (184-254)||(49557087-49557157)
chr1 (184-255)||(49517016-49517087)
chr1 (194-255)||(30371104-30371165)
chr1 (195-258)||(34179922-34179985)
chr1 (184-258)||(38578473-38578547)
chr1 (186-247)||(15360842-15360903)
chr1 (198-255)||(27738233-27738290)
chr1 (195-255)||(25479538-25479598)
chr1 (195-255)||(28467360-28467420)
chr1 (184-251)||(4200175-4200242)
chr1 (196-255)||(7218127-7218186)
chr1 (184-255)||(17269196-17269267)
chr1 (184-255)||(40304107-40304178)
chr1 (184-222)||(14737791-14737829)
chr1 (188-253)||(28938052-28938117)
chr1 (189-255)||(36070201-36070267)
chr1 (184-222)||(36641821-36641859)
chr1 (184-253)||(29007771-29007840)
chr1 (211-255)||(25006087-25006131)
chr1 (185-221)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (184-258)||(27522-27596)
[»] chr7 (10 HSPs)
chr7 (189-255)||(1417215-1417281)
chr7 (189-258)||(30456500-30456569)
chr7 (184-242)||(28165037-28165095)
chr7 (184-222)||(39591553-39591591)
chr7 (184-254)||(49060486-49060556)
chr7 (184-221)||(5276170-5276207)
chr7 (195-260)||(9527138-9527203)
chr7 (189-258)||(30496655-30496724)
chr7 (195-255)||(5006562-5006622)
chr7 (184-252)||(45813236-45813304)
[»] chr4 (15 HSPs)
chr4 (184-258)||(49219085-49219159)
chr4 (189-260)||(24929444-24929515)
chr4 (186-255)||(8130122-8130191)
chr4 (196-252)||(18630638-18630694)
chr4 (203-255)||(32920453-32920505)
chr4 (189-248)||(4071833-4071892)
chr4 (189-252)||(10192235-10192298)
chr4 (184-255)||(29373940-29374011)
chr4 (184-242)||(30024646-30024704)
chr4 (189-222)||(41701527-41701560)
chr4 (190-255)||(55870394-55870459)
chr4 (181-221)||(23815313-23815353)
chr4 (184-255)||(27623581-27623655)
chr4 (189-249)||(44638232-44638292)
chr4 (195-255)||(53626733-53626793)
[»] chr6 (14 HSPs)
chr6 (184-255)||(4006660-4006731)
chr6 (184-223)||(28531626-28531665)
chr6 (184-258)||(9668035-9668109)
chr6 (195-255)||(2727909-2727969)
chr6 (181-221)||(5328917-5328957)
chr6 (184-263)||(10452405-10452484)
chr6 (184-255)||(29274282-29274353)
chr6 (204-254)||(5550098-5550148)
chr6 (184-222)||(24836285-24836323)
chr6 (189-222)||(5551413-5551446)
chr6 (195-255)||(281901-281961)
chr6 (183-255)||(1402941-1403013)
chr6 (181-221)||(2027493-2027533)
chr6 (195-255)||(11340678-11340738)
[»] chr3 (15 HSPs)
chr3 (184-255)||(24235736-24235807)
chr3 (184-253)||(48364934-48365003)
chr3 (184-253)||(48397592-48397661)
chr3 (184-255)||(10101529-10101600)
chr3 (184-255)||(10212454-10212525)
chr3 (184-250)||(20192664-20192730)
chr3 (188-254)||(22214735-22214801)
chr3 (184-256)||(48323767-48323839)
chr3 (181-221)||(54775071-54775111)
chr3 (184-255)||(24887336-24887407)
chr3 (184-256)||(1395617-1395689)
chr3 (197-245)||(26599137-26599185)
chr3 (184-252)||(30956682-30956750)
chr3 (184-252)||(30972494-30972562)
chr3 (184-232)||(39971265-39971313)
[»] chr8 (9 HSPs)
chr8 (184-258)||(38561672-38561746)
chr8 (203-255)||(6509356-6509408)
chr8 (191-251)||(34551073-34551133)
chr8 (199-255)||(34770853-34770909)
chr8 (184-255)||(12361138-12361209)
chr8 (184-255)||(42597347-42597418)
chr8 (184-221)||(26820145-26820182)
chr8 (184-221)||(40728505-40728542)
chr8 (185-221)||(29699201-29699237)
[»] chr2 (10 HSPs)
chr2 (198-255)||(11513858-11513915)
chr2 (184-255)||(10143118-10143189)
chr2 (184-258)||(43199360-43199434)
chr2 (181-221)||(43199186-43199226)
chr2 (184-255)||(39567849-39567920)
chr2 (189-251)||(10285304-10285366)
chr2 (184-258)||(28803556-28803630)
chr2 (184-221)||(3458603-3458640)
chr2 (199-255)||(6993777-6993833)
chr2 (184-252)||(11344340-11344408)
[»] chr5 (9 HSPs)
chr5 (185-256)||(37690689-37690760)
chr5 (185-255)||(37526252-37526322)
chr5 (185-255)||(37588413-37588483)
chr5 (147-222)||(21782655-21782727)
chr5 (188-255)||(39823174-39823241)
chr5 (189-249)||(42181151-42181211)
chr5 (184-255)||(18704089-18704159)
chr5 (189-251)||(14295457-14295519)
chr5 (189-258)||(4855649-4855718)
[»] scaffold0508 (1 HSPs)
scaffold0508 (184-255)||(9828-9899)
[»] scaffold0053 (1 HSPs)
scaffold0053 (189-255)||(20130-20196)
[»] scaffold0549 (2 HSPs)
scaffold0549 (195-255)||(1777-1837)
scaffold0549 (195-255)||(3867-3927)


Alignment Details
Target: scaffold0049 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 58383 - 58137
Alignment:
Q  9 gagatgaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58383 gagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgt 58284  T
Q  109 aaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  58283 aaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtg---------tttaagttatttatataacaaaagata 58193  T
Q  209 acataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58192 acataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || |||||||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||||||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  194 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||||||||||||| |||||||||||| || ||||| || |||||||  ||||||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| |||||||||||||| ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  186 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 247  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 27738290 - 27738233
Alignment:
Q  198 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||| |||||||||||| || || ||||| ||||||| ||||||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 25479538 - 25479598
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||| |||||||| |||| ||||||| || || ||||| ||||||||||||||||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| ||||||||||||  | || ||||| |||| |||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 4200175 - 4200242
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 251  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||  ||||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttc 4200242  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 7218186 - 7218127
Alignment:
Q  196 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  7218186 ataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 17269196 - 17269267
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| || ||||||||  || |||||||||||| || || ||||| || |||||||||||||||||    
T  17269196 taagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 40304178 - 40304107
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||||||||||||||||||| ||||| ||| || || || ||||| | |||||| |||||||||||    
T  40304178 taagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaat 222  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 28938052 - 28938117
Alignment:
Q  188 ttatttatataacaaaa-gataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    |||||| |||||||||| |||||||||| |||||||  | || ||||||||||||||||||||||||    
T  28938052 ttatttttataacaaaaagataacataa-gtcaaatcattttcatatacgctataagttgttttcat 28938117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 36070201 - 36070267
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||| ||||||||||||||| ||||||| |||| || ||   ||| ||||||||||||||||||||    
T  36070201 tatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaat 222  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 29007840 - 29007771
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    |||||||||| |||||||||||| ||  ||||||||||   | || ||||| ||||||||||||||||||    
T  29007840 taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  211 ataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||| || || ||||| ||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  185 aagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  ||||||||||||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 30456569 - 30456500
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||| || |||||||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 242  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaat 222  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 49060486 - 49060556
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    |||| ||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||| ||||||||    
T  49060486 taagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaa 221  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 9527203 - 9527138
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 260  Q
    ||||||||||||||  |||||||||||  || || |||||  ||||||||||||||||||| ||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 30496655 - 30496724
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||| |||||||||| |||| |||||||||||| || ||  ||||  ||||| ||||||||||||||||    
T  30496655 tatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcataaact 30496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 5006622 - 5006562
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| |||||||||||  || || ||||| | ||||| ||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataa 5006562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 45813304 - 45813236
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| |||| |||||||||| |||||||||| | || || |||||  ||||||||||||||||    
T  45813304 taagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 260  Q
    ||||| ||||||||||||||| |||||||| ||  || || ||| | |||||||||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  186 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||| ||||||||||||||||||||||||||||  | || ||||| |||||||  |||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 18630638 - 18630694
Alignment:
Q  196 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||||||||||||| |||||||||| | || || ||||| |||||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  203 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||||||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 248  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 10192235 - 10192298
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    ||||| ||||||||||||||  |||||||||||| || || ||||| | |||||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttca 10192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 29374011 - 29373940
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||||||| ||||||| |||| ||||||  ||||| ||||| ||||||| ||||||||||||    
T  29374011 taagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttcataa 29373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 242  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaat 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 55870459 - 55870394
Alignment:
Q  190 atttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||||||||||| | |||||||||||  || || | ||| ||||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataa 55870394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  181 gtttaagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 27623581 - 27623655
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctat---aagttgttttcataa 255  Q
    |||| ||||| ||||||||||||||| |||||||||||   | |||||||| |||||   |||||||||||||||    
T  27623581 taagatatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataa 27623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 44638292 - 44638232
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 249  Q
    ||||||||||||||||||| | ||||||| ||||   ||| ||||| ||||||||||||||    
T  44638292 tatttatataacaaaagattatataaagttaaattacattcatataagctataagttgttt 44638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 53626733 - 53626793
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| ||||| |||||  || || ||||| |||||||| |||||||||||    
T  53626733 tataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataa 53626793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaata 223  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || || ||||| |||| || |||||||||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  181 gtttaagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 10452484 - 10452405
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctc 263  Q
    |||| ||||| |||||||||| |||| ||||| |||||   | || ||||| |||||||||||||| |||||||||||||    
T  10452484 taagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataaactctctc 10452405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 29274353 - 29274282
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| |||| |||||||||| |||||||||||| || || ||||| |||||||  |||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 5550098 - 5550148
Alignment:
Q  204 agataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaat 222  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaat 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 281961 - 281901
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| |||||||||| | || || ||||| |||||||| ||| |||||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataa 281901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 1402941 - 1403013
Alignment:
Q  183 ttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||| ||||| ||||||||||||||| ||||||| |||   | || ||||| ||||||| ||||||||||||    
T  1402941 ttaagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 2027533 - 2027493
Alignment:
Q  181 gtttaagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaa 2027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 11340738 - 11340678
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  11340738 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 11340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 253  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 20192730 - 20192664
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttt 250  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| ||||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  188 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 254  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  ||||||||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 256  Q
    |||||||||| ||||| ||||||||| |||||||||||| || ||  | || ||||||| |||||||||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  181 gtttaagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 24887407 - 24887336
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| |||||||| |||||| |||||||||||  ||||| ||||| |||| ||| |||||||||||    
T  24887407 taagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataa 24887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 1395617 - 1395689
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 256  Q
    |||| ||||| ||||||||||||||| ||||||||||||  | || ||||| ||||| |  ||||||||||||    
T  1395617 taagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataaa 1395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  197 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 245  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 30956750 - 30956682
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30956750 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 30972562 - 30972494
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30972562 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaata 232  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||||||||||||||||||| |||||||||||   | || || ||  ||||||||||||||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  203 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 34551073 - 34551133
Alignment:
Q  191 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 251  Q
    |||||||||||||||||||||| ||||||||| || || || || | ||||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttc 34551133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 34770853 - 34770909
Alignment:
Q  199 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||| |||||||||||| || || || || ||||||||||||||||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 12361138 - 12361209
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||  |||||||| || ||||||||| || || ||||| |||||||| |||||||||||    
T  12361138 taagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 42597347 - 42597418
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || || ||  | ||||||||||||||||||||    
T  42597347 taagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaa 221  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaa 221  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  185 aagttatttatataacaaaagataacataaagtcaaa 221  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 11513858 - 11513915
Alignment:
Q  198 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 10143118 - 10143189
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| |||||||||| |||||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataa 10143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    |||||||||| || |||||||||||| ||||||| ||||  | ||  |||| |||||||||||||||||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  181 gtttaagttatttatataacaaaagataacataaagtcaaa 221  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 39567849 - 39567920
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || | || ||| |||||||| |||||||||||    
T  39567849 taagatatttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataa 39567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 10285304 - 10285366
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 251  Q
    ||||| ||||||||||| ||| |||| |||||||||  || ||||| ||||||||||||||||    
T  10285304 tatttctataacaaaagttaaaataatgtcaaataggttttatataagctataagttgttttc 10285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 28803630 - 28803556
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||||||||  |||||||||||||| |||||||||||  |  || ||||| |||| ||||||||||| ||||||    
T  28803630 taagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaact 28803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaa 221  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 6993833 - 6993777
Alignment:
Q  199 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||| |||| |||||||  |||| ||||| |||||| |||||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataa 6993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 11344408 - 11344340
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 252  Q
    |||| ||||| ||||||||||||||| | |||||||||| || || ||| | ||||||| |||||||||    
T  11344408 taagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  185 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 256  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| |||||||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  185 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  185 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  147 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 222  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 39823241 - 39823174
Alignment:
Q  188 ttatttatataacaaaagataacataaagtcaaa-tagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||||||||||||||| ||||||||||| || | || ||||| |||| |||||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactact-ttcatataagctacaagttgttttcataa 39823174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 249  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 18704159 - 18704089
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| ||||||||||||||| ||||||||||    | || ||||| ||||||||||||||||||||    
T  18704159 taagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataagttgttttcataa 18704089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 14295457 - 14295519
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 251  Q
    ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||| |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 4855649 - 4855718
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 258  Q
    ||||| |||||||||| |||| ||||||| |||| ||  | ||||| | |||||||||||||||||||||    
T  4855649 tatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcataaact 4855718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 9899 - 9828
Alignment:
Q  184 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    |||||||||| |||||||||| |||| || |||||||| ||| || ||||| | |||| |||||||||||||    
T  9899 taagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataagttataggttgttttcataa 9828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 20130 - 20196
Alignment:
Q  189 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||| |||||| |||||||| ||||||||||| |||  | ||||| ||||| ||||||||||||||    
T  20130 tatttctataaccaaagataaaataaagtcaaacagttatcatataagctattagttgttttcataa 20196  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 1837 - 1777
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  1837 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 1777  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 3927 - 3867
Alignment:
Q  195 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 255  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  3927 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 3867  T

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