View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_167 (Length: 283)

Name: NF10049A_low_167
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_167
NF10049A_low_167
[»] chr2 (19 HSPs)
chr2 (5-277)||(39215622-39215894)
chr2 (9-274)||(39161836-39162104)
chr2 (9-274)||(39207090-39207358)
chr2 (104-271)||(39192266-39192436)
chr2 (104-271)||(39197946-39198116)
chr2 (104-206)||(39222932-39223037)
chr2 (137-274)||(39370254-39370394)
chr2 (9-272)||(39388918-39389186)
chr2 (133-270)||(39381275-39381412)
chr2 (9-55)||(39468333-39468379)
chr2 (133-178)||(39421688-39421733)
chr2 (9-79)||(39370102-39370172)
chr2 (133-170)||(39468448-39468485)
chr2 (16-59)||(39381510-39381553)
chr2 (9-59)||(39192439-39192489)
chr2 (9-59)||(39198119-39198169)
chr2 (16-58)||(39459253-39459295)
chr2 (212-265)||(39223101-39223154)
chr2 (126-170)||(39459387-39459431)
[»] chr5 (2 HSPs)
chr5 (133-274)||(33561135-33561281)
chr5 (138-178)||(17059602-17059642)
[»] chr7 (1 HSPs)
chr7 (134-230)||(19807963-19808059)
[»] chr6 (2 HSPs)
chr6 (9-55)||(16113293-16113339)
chr6 (133-170)||(16113441-16113478)
[»] chr8 (1 HSPs)
chr8 (149-264)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-153; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 5 - 277
Target Start/End: Original strand, 39215622 - 39215894
Alignment:
Q  5 ggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttggg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215622 ggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttggg 39215721  T
Q  105 tcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215722 tcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgat 39215821  T
Q  205 gacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215822 gacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 39161836 - 39162104
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaa 108  Q
    |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || |||||    
T  39161836 aaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaa 39161935  T
Q  109 ggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatg 205  Q
    |||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||    
T  39161936 ggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatg 39162035  T
Q  206 acaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 274  Q
    | | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39162036 atattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 39207358 - 39207090
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaa 108  Q
    |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || |||||    
T  39207358 aaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaa 39207259  T
Q  109 ggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatg 205  Q
    |||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||    
T  39207258 ggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatg 39207159  T
Q  206 acaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 274  Q
    | | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39207158 atattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  104 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 200  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  201 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 271  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 271
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  104 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 200  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  201 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 271  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 206
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  104 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 200  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  201 tgatga 206  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  137 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 233  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  234 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 274  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 39389186 - 39388918
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaa 108  Q
    |||||| |||| |||||||| |||||||||| ||| |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | |||||    
T  39389186 aaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaa 39389087  T
Q  109 ggaaaaaatatattgaag---aaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatg 205  Q
    ||||||||||| |||| |   ||| | |||| |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||    
T  39389086 ggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatg 39388987  T
Q  206 aca--atttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtc 272  Q
    | |   |||||||| |  ||||||| || ||   || |||  |||||||||||||||||||| ||||||    
T  39388986 atattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  133 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 232  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  233 ttgtttaaaaatatttttaatcatgttaatgttttatg 270  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 39468333 - 39468379
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 55  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  39468333 aaggagttcaagttaaaagagaagcagattgaaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  133 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 178  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 39370102 - 39370172
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaatt 79  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| || | ||| |||| |||| |||||    
T  39370102 aaggagttcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  133 aatcgggtaaatgttcttattcatctagtttattgaaa 170  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 39381553 - 39381510
Alignment:
Q  16 tcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 59  Q
    |||||||||||||||||||||||| | |||||| ||||||||||    
T  39381553 tcaagttaaaagagaagcagtttgaaagacaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39192489 - 39192439
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 59  Q
    |||||| |||| |||||||| |||||||||| ||||| |||||||||||||    
T  39192489 aaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39198169 - 39198119
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 59  Q
    |||||| |||| |||||||| |||||||||| ||||| |||||||||||||    
T  39198169 aaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 39459253 - 39459295
Alignment:
Q  16 tcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 58  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459253 tcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  212 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 265  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  126 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 170  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  133 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 228  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  229 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 274  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  138 ggtaaatgttcttattcatctagtttattgaaagagtttca 178  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  134 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 230  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 16113293 - 16113339
Alignment:
Q  9 aaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 55  Q
    |||||| |||||||||||||||||||| ||| || ||||||||||||    
T  16113293 aaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  133 aatcgggtaaatgttcttattcatctagtttattgaaa 170  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  149 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 245  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  246 tttttaatcatgttaatgt 264  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

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