View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_169 (Length: 282)
Name: NF10049A_low_169
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_169 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 45934795 - 45934582
Alignment:
| Q |
7 |
aatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaagaacaatctcaagtattttccctcgg |
106 |
Q |
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| T |
45934795 |
aatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaaaaacaatctcaagtattttccctcgg |
45934696 |
T |
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| Q |
107 |
acattggagtatttcaggtgttcattttcttcatcccaccaagattcccagctttgatcagatggaataacaataccaccctggtttcccatccaccgct |
206 |
Q |
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| T |
45934695 |
acattggagtatttcagatgttcattttcttcatcccaccaagattcccagctttgatcagatggaataccaataccaccctggtttcccatccaccgct |
45934596 |
T |
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| Q |
207 |
tccaatctgtccag |
220 |
Q |
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|||||||||||||| |
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| T |
45934595 |
tccaatctgtccag |
45934582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 45934506 - 45934458
Alignment:
| Q |
221 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatat |
269 |
Q |
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| T |
45934506 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatat |
45934458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 15817028 - 15816822
Alignment:
| Q |
7 |
aatatttttgctacgatgcgcaatattcaggtggtagatgattccatattgatagataaagaaacgacatgcaagaacaatctcaagtattttccctcgg |
106 |
Q |
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| T |
15817028 |
aatatttttgctacgacgcgcaatattcaggtggtagacaattccatattggtagataaagaagcggcatgcaagaacaatctcaagtattttccctcgg |
15816929 |
T |
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| Q |
107 |
acattggagtatttcaggtgttcattttcttcatcccaccaagattcccagctttgatcagatggaataacaataccaccctggtttcccatccaccgct |
206 |
Q |
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| T |
15816928 |
acattggagtatttcaggtgttcattttcttcatcccaccaagattcccagcttttatcagatggaataccaataccaccacggtttcccatccaccgct |
15816829 |
T |
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| Q |
207 |
tccaatc |
213 |
Q |
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||||||| |
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| T |
15816828 |
tccaatc |
15816822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 15816740 - 15816696
Alignment:
| Q |
221 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcg |
265 |
Q |
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||||||||||||||||||||| | ||||| |||||| |||||||| |
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| T |
15816740 |
aaaccacattgagattgtgatgaagaaataaagagttgagcttcg |
15816696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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