View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_17 (Length: 456)
Name: NF10049A_low_17
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Original strand, 48192094 - 48192520
Alignment:
| Q |
12 |
tgttgaattgggacttggactatagccattaaccatatctttttcaaacaaatcacctaattatgtgttttggttcataagcatggctttttgcaggtga |
111 |
Q |
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| T |
48192094 |
tgttgaactgggacttggactatagccattaaccatatctttttcaaacaaatcacctaatgatgtgttttggttcataagcatggctttttgcaggtga |
48192193 |
T |
|
| Q |
112 |
ttcatcatccaaggccaaaagggaatgtaacttcagaatagggtctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctg |
211 |
Q |
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| T |
48192194 |
ttcatcatccaaggccaaa-gggaatgtaactgcagaataggatctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctg |
48192292 |
T |
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| Q |
212 |
tcaaaatatatgctaccttcaagtaagggaaaagttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcc |
311 |
Q |
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| T |
48192293 |
tcaaaatatatgctaccttcaagtaagggaaaagttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcc |
48192392 |
T |
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| Q |
312 |
tctatggagtccaggccaagttttatgtatcctatcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagc |
411 |
Q |
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| T |
48192393 |
tctatggagtccaggccaagttttatgtatcctatcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtcttcatcaggaattgcaagc |
48192492 |
T |
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| Q |
412 |
tgagaaatctgttcaagtgttgtgtttg |
439 |
Q |
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| T |
48192493 |
tgagaaatctgttcaagtgttgtgtttg |
48192520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 157 - 439
Target Start/End: Original strand, 2086335 - 2086617
Alignment:
| Q |
157 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaagtaagggaaaagttcaaagaaaa |
256 |
Q |
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| T |
2086335 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatttgtcaaaatatatgctaccttcaaaaaagggaaaagctcaaagaaaa |
2086434 |
T |
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| Q |
257 |
acttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgc |
356 |
Q |
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| T |
2086435 |
atttctgaaccataatttcttcagaaagcataataattcttgtggaatttaaggctctatggagtcctggccaggttttgagtatcctatcagcaagtgc |
2086534 |
T |
|
| Q |
357 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
439 |
Q |
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| T |
2086535 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggagttgcaagctgagaaatctgttcaagtgttgtgtttg |
2086617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 2085890 - 2085989
Alignment:
| Q |
12 |
tgttgaattgggacttggactatagccattaaccatatctttttcaaacaaatcacctaattatgtgttttggttcataagcatggctttttgcaggtga |
111 |
Q |
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| T |
2085890 |
tgttgaatcgggacttggactatagccattaaccatatctttttcaagcaaatcacctaatgatgtgttttggttcataagcatggctttttgcaggtga |
2085989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 2086037 - 2086080
Alignment:
| Q |
109 |
tgattcatcatccaaggccaaaagggaatgtaacttcagaatag |
152 |
Q |
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| T |
2086037 |
tgattcatcatccaaggccaaaagggaatgtaactgcagaatag |
2086080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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