View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_170 (Length: 281)
Name: NF10049A_low_170
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_170 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 20816561 - 20816837
Alignment:
| Q |
1 |
gtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816561 |
gtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaa |
20816660 |
T |
|
| Q |
101 |
agaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816661 |
agaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacg |
20816760 |
T |
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| Q |
201 |
atttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
277 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816761 |
atttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
20816837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 38779584 - 38779308
Alignment:
| Q |
1 |
gtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaa |
100 |
Q |
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|||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| ||| |
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| T |
38779584 |
gtctttgttggtgtctccaatatcaaaagctagtgcacaccagaggtctggacgtgctggaagaactcagccggggaaatgctttagactttataccgaa |
38779485 |
T |
|
| Q |
101 |
agaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| | |
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| T |
38779484 |
agaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgccaacacagttcttacattgaagaaactgggtatagatg |
38779385 |
T |
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| Q |
201 |
atttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
277 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||| |
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| T |
38779384 |
atttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgctttggaagtgttgaattacttg |
38779308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 33388543 - 33388268
Alignment:
| Q |
1 |
gtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||| |||||| ||||| ||| |
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| T |
33388543 |
gtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccgaa |
33388444 |
T |
|
| Q |
101 |
agaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtatagacg |
200 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| | |
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| T |
33388443 |
ataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtatagatg |
33388344 |
T |
|
| Q |
201 |
atttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattactt |
276 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
33388343 |
atttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgctttggaagtgttgaattactt |
33388268 |
T |
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