View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_171 (Length: 281)
Name: NF10049A_low_171
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_171 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 14485106 - 14484831
Alignment:
| Q |
12 |
atgaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
14485106 |
atgaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacggcaaaaaa-ggttgaatctgaagt |
14485008 |
T |
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| Q |
112 |
gttggtggaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagatagagaagggttgtacggcgatgagtagta |
211 |
Q |
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| T |
14485007 |
gttggtggaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagatagagaagggttgtacggcgatgagtagta |
14484908 |
T |
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| Q |
212 |
aacatttgaaaagc-----------aattacaaaatga--ttaagaaattgaaaaaggcggaaaggagagtgaaatt |
275 |
Q |
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| T |
14484907 |
aacatttgaaaagcaattgaagatgaattacaaaatgattttaagaaattgaaaaaggcgtaaaggagagtgaaatt |
14484831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 14476328 - 14476457
Alignment:
| Q |
15 |
aacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgtt |
114 |
Q |
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| T |
14476328 |
aacattgtaagtggaggaaagtttggaagcagattgtgggtcaaagccaaaattgttgatgaggtaggagacagc-aaaagaggttgaatctgaagtgtt |
14476426 |
T |
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| Q |
115 |
ggtggaaaaatagtgagaaaatggtaatggg |
145 |
Q |
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| T |
14476427 |
ggtgcaaaaatggagaggaaagggtaatggg |
14476457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 14502040 - 14501878
Alignment:
| Q |
19 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
118 |
Q |
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| T |
14502040 |
ttgtaggtggagcagagtttggaagcaaattgtgggtcaaagccaaaattgttgatgaggtatgagacag-aaaatgaggttgaatctgaagtgttggtg |
14501942 |
T |
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| Q |
119 |
gaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagat |
182 |
Q |
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| T |
14501941 |
cagaaatgaagagaaaatggtaatggggttattgggtttggtgagaaagttaagggtttgagat |
14501878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 14481514 - 14481581
Alignment:
| Q |
19 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagac |
86 |
Q |
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| T |
14481514 |
ttgtaagtggaacaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtatgagac |
14481581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 14152738 - 14152655
Alignment:
| Q |
34 |
agtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
118 |
Q |
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| T |
14152738 |
agtttggaagcagattgtgggtcaaaaccaaaattgttgatgaggtaggagactgc-aagagaggttgaatctgaagtgttggtg |
14152655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 14165509 - 14165559
Alignment:
| Q |
34 |
agtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagag |
84 |
Q |
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| T |
14165509 |
agtttggaagcaaattgtggggtaaacccaaaattgtgaatgaggtaagag |
14165559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 14494553 - 14494427
Alignment:
| Q |
19 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
118 |
Q |
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|||||||||||| | |||||||||||| |||||||| ||| ||||| |||| |||||||| |||||||| ||||||||| |||| ||||||| |
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| T |
14494553 |
ttgtaagtggagcagagtttggaagcagattgtgggtcaaacccaaacttgtgaatgaggtatgagacagc-aaaagaggttgaatcagaagcgttggtg |
14494455 |
T |
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| Q |
119 |
gaaaaatagtgagaaaatggtaatgggt |
146 |
Q |
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| T |
14494454 |
cataaatggagagaaaatggaaatgggt |
14494427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 14162429 - 14162492
Alignment:
| Q |
14 |
gaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgag |
77 |
Q |
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|||||||||||| |||| | ||||| |||||||||||||||| ||||||||||| | |||||| |
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| T |
14162429 |
gaacattgtaagaggagaagagtttagaagcaaattgtggggtgaagccaaaattatggatgag |
14162492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 14144766 - 14144710
Alignment:
| Q |
24 |
agtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggta |
80 |
Q |
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| T |
14144766 |
agtggagcatagtttggaagcaaattgtgggtcaaacccaaaattgtgaatgaggta |
14144710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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