View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_174 (Length: 277)
Name: NF10049A_low_174
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_174 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 24370424 - 24370687
Alignment:
| Q |
3 |
ccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttca |
102 |
Q |
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| T |
24370424 |
ccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattca |
24370523 |
T |
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| Q |
103 |
tgttttctaaagtgacagagtttatgcatctgtttaggacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaa |
202 |
Q |
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| T |
24370524 |
tgtttactaaagtgacagagtttatgcatctgtttaggacattgttgtagcttaaaccaagttaaactttcctttccatcaaataggttgagtgaagtaa |
24370623 |
T |
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| Q |
203 |
taaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatggt |
266 |
Q |
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| T |
24370624 |
taaccttcacctttggttgtagctgaacttcattttgaaatattttgaaggaaatgtctatggt |
24370687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 24364093 - 24363972
Alignment:
| Q |
29 |
gaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatg |
128 |
Q |
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| T |
24364093 |
gaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaagtgacagagtttatg |
24363994 |
T |
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| Q |
129 |
catctgtttaggacattgttgt |
150 |
Q |
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| T |
24363993 |
cgtctgttttagagattgttgt |
24363972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 24362870 - 24362979
Alignment:
| Q |
11 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttct |
110 |
Q |
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|||| ||| |||||||| |||||||||||| |||| ||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| | |
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| T |
24362870 |
tggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttat |
24362969 |
T |
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| Q |
111 |
aaagtgacag |
120 |
Q |
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|||| ||||| |
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| T |
24362970 |
aaagggacag |
24362979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 24356025 - 24356127
Alignment:
| Q |
11 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttct |
110 |
Q |
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| T |
24356025 |
tggtccttgtttgcaagagaaagtggactgcaacaaggaaatgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttct |
24356124 |
T |
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| Q |
111 |
aaa |
113 |
Q |
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||| |
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| T |
24356125 |
aaa |
24356127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 24346918 - 24347003
Alignment:
| Q |
11 |
tggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaa |
96 |
Q |
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| T |
24346918 |
tggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 24352660 - 24352746
Alignment:
| Q |
51 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacagagtttatgcatctgttt |
137 |
Q |
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| T |
24352660 |
atgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttt |
24352746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 24359363 - 24359454
Alignment:
| Q |
20 |
tttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttcta |
111 |
Q |
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| T |
24359363 |
tttgcaagtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta |
24359454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 24314062 - 24314129
Alignment:
| Q |
53 |
gtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagtgacag |
120 |
Q |
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| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcatattaccaaaagtgacag |
24314129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 24363956 - 24363889
Alignment:
| Q |
197 |
aagtaataaccttcacctttggttgtagatgaacttcattttgaaatattttgaaggaaatgtctatg |
264 |
Q |
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| T |
24363956 |
aagtgataatcttcacatttggttgtagttgtatttaagtttgaaatattttgaaggaaatatctatg |
24363889 |
T |
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