View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_187 (Length: 270)
Name: NF10049A_low_187
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_187 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5689018 - 5688749
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5689018 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagt |
5688919 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgc |
197 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5688918 |
ttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgc |
5688819 |
T |
|
| Q |
198 |
tattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
5688818 |
tattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga |
5688749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5177919 - 5178177
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5177919 |
atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt |
5178018 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat |
200 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
5178019 |
ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgcttt |
5178112 |
T |
|
| Q |
201 |
-taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga |
264 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5178113 |
gtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga |
5178177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5279744 - 5280008
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5279744 |
atgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagt |
5279843 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgc |
197 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5279844 |
ttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgc |
5279937 |
T |
|
| Q |
198 |
tat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga |
264 |
Q |
| |
|
| | | ||||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
5279938 |
tttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga |
5280008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
| Q |
14 |
gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat |
113 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
5242614 |
gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat |
5242515 |
T |
|
| Q |
114 |
gatgaaccaat |
124 |
Q |
| |
|
||||||||||| |
|
|
| T |
5242514 |
gatgaaccaat |
5242504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 5126732 - 5126597
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| ||| ||||| ||||||| | |||||||||||||||||||| ||| | ||||||||| |||| |
|
|
| T |
5126732 |
agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata |
5126633 |
T |
|
| Q |
113 |
tgatgaaccaatccgtgaaaatatggagcaatgtca |
148 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||| |
|
|
| T |
5126632 |
tgatgaaccaattggtgaaactatgaagcaatgtca |
5126597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5065564 - 5065338
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||| | || |||||||| ||||| ||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
5065564 |
atgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagt |
5065465 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgctat |
200 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||| | ||||| | |||||| | |||| |||||| |||| ||||||||| ||||||||| | |
|
|
| T |
5065464 |
ttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt |
5065365 |
T |
|
| Q |
201 |
-taagagaggtctcttctaatgcacaa |
226 |
Q |
| |
|
|| | ||| |||||||| |||||||| |
|
|
| T |
5065364 |
ctaggcgagatctcttctcatgcacaa |
5065338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
| Q |
15 |
agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| ||| ||||||||||||||||| |
|
|
| T |
5427094 |
agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg |
5427193 |
T |
|
| Q |
115 |
atgaaccaat |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
5427194 |
atgaaccaat |
5427203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| |||||||| |
|
|
| T |
5398226 |
atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt |
5398325 |
T |
|
| Q |
101 |
ttatctcgtatatgat |
116 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
5398326 |
ttatcttgtatatgat |
5398341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 5346209 - 5346327
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| || ||||||||||||||||| ||| || | |
|
|
| T |
5346209 |
atgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaat |
5346308 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaa |
119 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
5346309 |
ttatctcatatatgatgaa |
5346327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
| Q |
18 |
gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||| |
|
|
| T |
5100916 |
gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg |
5100817 |
T |
|
| Q |
118 |
aacca |
122 |
Q |
| |
|
||||| |
|
|
| T |
5100816 |
aacca |
5100812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
| Q |
18 |
gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||| |
|
|
| T |
5136017 |
gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg |
5135918 |
T |
|
| Q |
118 |
aacca |
122 |
Q |
| |
|
||||| |
|
|
| T |
5135917 |
aacca |
5135913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5180889 - 5180773
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| |||||||||||||||| |||| ||||||||| || |||||||||||||||| ||| || | |
|
|
| T |
5180889 |
atgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaat |
5180790 |
T |
|
| Q |
101 |
ttatctcgtatatgatg |
117 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
5180789 |
ttatctggtatatgatg |
5180773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 5098402 - 5098523
Alignment:
| Q |
12 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
111 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||||||| || |||||| || ||| ||||||||||||| || ||| |||||||||| |||| |
|
|
| T |
5098402 |
cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat |
5098501 |
T |
|
| Q |
112 |
atgatgaaccaatccgtgaaaa |
133 |
Q |
| |
|
||||||||| ||| ||||||| |
|
|
| T |
5098502 |
atgatgaacaaattggtgaaaa |
5098523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5156128 - 5156007
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||| |||||||||||||||| || |||||| || | ||||||||||||||| |||||||| |
|
|
| T |
5156128 |
atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagt |
5156029 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaacca |
122 |
Q |
| |
|
|||||| ||||| ||||||||| |
|
|
| T |
5156028 |
ttatcttgtatacgatgaacca |
5156007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5372277 - 5372398
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||||||||| ||||| |||||||||||| |||||||| |||||||||||||| | || |||| | || || | ||||||||||||||| |||||| | |
|
|
| T |
5372277 |
atgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaat |
5372376 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaacca |
122 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
5372377 |
ttatctcgtatacgatgaacca |
5372398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
| Q |
19 |
tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga |
118 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||| |||||||| || |||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
23127407 |
tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga |
23127308 |
T |
|
| Q |
119 |
ac |
120 |
Q |
| |
|
|| |
|
|
| T |
23127307 |
ac |
23127306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5351580 - 5351701
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| |||||| || || | || ||||||||| || ||| ||| |
|
|
| T |
5351580 |
atgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagt |
5351679 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaacca |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5351680 |
ttatctcgtatatgatgaacca |
5351701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5352978 - 5352855
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| ||| |||||| || || ||||||| |||||||| |||||| | |
|
|
| T |
5352978 |
atgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaat |
5352879 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaat |
124 |
Q |
| |
|
|||||| ||||||||| ||||||| |
|
|
| T |
5352878 |
ttatctggtatatgataaaccaat |
5352855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 2939095 - 2939216
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
||||||| || ||||| |||||||||||| || ||||| |||||||||||||||| || |||| | || || | || |||||||||||| ||||| | |
|
|
| T |
2939095 |
atgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaat |
2939194 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaacca |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2939195 |
ttatctcgtatatgatgaacca |
2939216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
| Q |
12 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
111 |
Q |
| |
|
||||| ||| |||||||||| ||||| |||||||||||||||| | | ||||||||| ||| |||||||||||||||| ||| || ||||||| |||| |
|
|
| T |
5283328 |
cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat |
5283229 |
T |
|
| Q |
112 |
atgatg |
117 |
Q |
| |
|
|||||| |
|
|
| T |
5283228 |
atgatg |
5283223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 5072785 - 5072674
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||| ||||||||||||| |||| |||| |||| |||||||||||| || |||| | |||||||| |||| |
|
|
| T |
5072785 |
agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata |
5072686 |
T |
|
| Q |
113 |
tgatgaaccaat |
124 |
Q |
| |
|
|||||| |||| |
|
|
| T |
5072685 |
cgatgaatcaat |
5072674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
| Q |
23 |
atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| | || | |||||||| || || ||| ||| ||||||||||||||||| |
|
|
| T |
5439213 |
atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg |
5439307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
| Q |
6 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
105 |
Q |
| |
|
||||| || |||||| ||| |||||| |||||| | || ||||||||| ||||| ||||||||| ||| ||||||||||||||| || |||||||||| |
|
|
| T |
5253718 |
gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc |
5253817 |
T |
|
| Q |
106 |
tcgtatatga |
115 |
Q |
| |
|
|| ||||||| |
|
|
| T |
5253818 |
tcatatatga |
5253827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5334365 - 5334455
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa |
91 |
Q |
| |
|
|||||||||| |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| ||||||| |
|
|
| T |
5334365 |
atgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa |
5334455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
| Q |
6 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
105 |
Q |
| |
|
||||| || ||| ||||||| |||||||||||| |||| |||||||| |||||| ||||||| | ||| | |||||||||||| | |||||| | ||| |
|
|
| T |
5124553 |
gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata |
5124454 |
T |
|
| Q |
106 |
tcgtatatgatgaac |
120 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
5124453 |
ttatatatgatgaac |
5124439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
| Q |
12 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
111 |
Q |
| |
|
||||| ||| |||||||||| ||||| |||||||||||||||| || | |||||| | || | ||||||||||||||| ||| || ||||| | |||| |
|
|
| T |
5256218 |
cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat |
5256119 |
T |
|
| Q |
112 |
atgatg |
117 |
Q |
| |
|
|||||| |
|
|
| T |
5256118 |
atgatg |
5256113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
| Q |
6 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
105 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| | |||||||||||| | |||| |||||| || || | ||||| |||| |||| ||| ||| |||| |
|
|
| T |
5448794 |
gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc |
5448893 |
T |
|
| Q |
106 |
tcgtatatgatg |
117 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5448894 |
tggtatatgatg |
5448905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||| ||||||| ||| |||||| || ||||||||||| ||||| |||||||| ||| |||||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
4122747 |
agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata |
4122648 |
T |
|
| Q |
113 |
tgatgaaccaatccgtgaaaatatggagcaatg |
145 |
Q |
| |
|
||||||||||||| ||||||| || |||||||| |
|
|
| T |
4122647 |
tgatgaaccaatcggtgaaaaaatagagcaatg |
4122615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
| Q |
17 |
agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat |
113 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
25569036 |
agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac |
25569135 |
T |
|
| Q |
114 |
gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat |
195 |
Q |
| |
|
||||||| ||| | |||| ||||||||| ||||| | ||||||||||| |||||| | || |||||||||| |||||| |
|
|
| T |
25569136 |
gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat |
25569217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
| Q |
12 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
111 |
Q |
| |
|
|||||||||||||||| ||| |||||| || ||||||| ||| ||||| ||||||| ||| |||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
4132719 |
cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat |
4132623 |
T |
|
| Q |
112 |
atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga |
157 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||| | |||||| |
|
|
| T |
4132622 |
atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga |
4132577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
| Q |
12 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
111 |
Q |
| |
|
|||||||| ||| ||| ||| |||||| || |||| |||||| ||||| ||||||| ||| |||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
4319406 |
cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat |
4319307 |
T |
|
| Q |
112 |
atgatgaacca |
122 |
Q |
| |
|
||||||||||| |
|
|
| T |
4319306 |
atgatgaacca |
4319296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
| Q |
78 |
ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
7884193 |
ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat |
7884147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
| Q |
79 |
tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
124 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4346621 |
tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat |
4346666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
| Q |
79 |
tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
124 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4362810 |
tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat |
4362855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47985496 - 47985393
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
47985496 |
agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata |
47985397 |
T |
|
| Q |
113 |
tgat |
116 |
Q |
| |
|
|||| |
|
|
| T |
47985396 |
tgat |
47985393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 48004070 - 48003967
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
48004070 |
agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata |
48003971 |
T |
|
| Q |
113 |
tgat |
116 |
Q |
| |
|
|||| |
|
|
| T |
48003970 |
tgat |
48003967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47994783 - 47994680
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
47994783 |
agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata |
47994684 |
T |
|
| Q |
113 |
tgat |
116 |
Q |
| |
|
|||| |
|
|
| T |
47994683 |
tgat |
47994680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 48013355 - 48013252
Alignment:
| Q |
13 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
112 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | |||||||||| ||||| |
|
|
| T |
48013355 |
agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata |
48013256 |
T |
|
| Q |
113 |
tgat |
116 |
Q |
| |
|
|||| |
|
|
| T |
48013255 |
tgat |
48013252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36213036 - 36212913
Alignment:
| Q |
1 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
100 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||||| ||| ||||||||||||||| ||| | | |
|
|
| T |
36213036 |
atgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgat |
36212937 |
T |
|
| Q |
101 |
ttatctcgtatatgatgaaccaat |
124 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
36212936 |
ttatctcatttatgatgaaccaat |
36212913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
| Q |
19 |
tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga |
115 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||||| |||||||| |||||||||||| ||| |||||||| ||||||| ||||||| |
|
|
| T |
7974 |
tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga |
7878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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