View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_19 (Length: 446)
Name: NF10049A_low_19
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_19 |
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| [»] scaffold0154 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 7440894 - 7440462
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7440894 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagttaacaata |
7440795 |
T |
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| Q |
112 |
ttacctctgatgagccataatacaaccggcccttgccttctttaatgttttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataa |
211 |
Q |
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| T |
7440794 |
ttacctctgatgagccatactactaccgccccttgccttatttaatgtcttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataa |
7440695 |
T |
|
| Q |
212 |
tttataacgcttgatttcctcaattcactctagcc----atttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac |
307 |
Q |
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| T |
7440694 |
tttataacacttgatttcctcaattcactctagccattaatttaacaaagaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaac |
7440595 |
T |
|
| Q |
308 |
atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
7440594 |
atgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggattgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacg |
7440495 |
T |
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| Q |
408 |
attccattacaaaagaaagtctaacagtcttag |
440 |
Q |
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| T |
7440494 |
attccattacaaaagaaagtataacagtcttag |
7440462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 6397753 - 6397845
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt |
104 |
Q |
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| T |
6397753 |
atagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagtt |
6397845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 42517168 - 42517120
Alignment:
| Q |
42 |
tgtgatgaattagagtttcggtgttacaaacaatatatatagtattact |
90 |
Q |
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| T |
42517168 |
tgtgatgaattagggtttcggtgttacaaacaatatatatagtactact |
42517120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 41941137 - 41941063
Alignment:
| Q |
42 |
tgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc |
116 |
Q |
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| T |
41941137 |
tgtgatgaattagggtttcaatgttacaagtaatatatatactactactactacgattcagtttacaatattacc |
41941063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 4490394 - 4490295
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaata |
111 |
Q |
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| T |
4490394 |
atagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatgattcagtttacaata |
4490295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 24447236 - 24447163
Alignment:
| Q |
31 |
gtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagtt |
104 |
Q |
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| T |
24447236 |
gtttgtattactgtgatgaatttgagtttcagtattacaagcaatacatataatactactgctacgattcagtt |
24447163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19340641 - 19340568
Alignment:
| Q |
12 |
atagagcggttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagta |
85 |
Q |
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| T |
19340641 |
atagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta |
19340568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 19276979 - 19276885
Alignment:
| Q |
22 |
tatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacc |
116 |
Q |
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|||||||| |||| ||||| |||||||| |||| ||||| |||||| | |||||||||||||| | | ||| ||||||| | ||||||||||| |
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| T |
19276979 |
tatagtttcgtttgtattactgtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcagattacaatattacc |
19276885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 36010267 - 36010202
Alignment:
| Q |
49 |
aattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatatta |
114 |
Q |
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| T |
36010267 |
aattaaagtttcaatgttacaaacaatatatataatactacttctacgattcagttcacaatatta |
36010202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 3284201 - 3284295
Alignment:
| Q |
21 |
ttatagttttgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattac |
115 |
Q |
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|||||||| |||||||||| ||||||||||||| |||| | ||||||| ||| ||||||| || |||| ||| ||| |||| |||||||||| |
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| T |
3284201 |
ttatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatatatattactactactacaattaagtttacaatattac |
3284295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 19385 - 19342
Alignment:
| Q |
42 |
tgtgatgaattagagtttcggtgttacaaacaatatatatagta |
85 |
Q |
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| T |
19385 |
tgtgatgaattagggtttcactgttacaaacaatatatatagta |
19342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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