View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_190 (Length: 267)
Name: NF10049A_low_190
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_190 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 32134458 - 32134672
Alignment:
| Q |
44 |
gaattgttgctcaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattggacacgac |
143 |
Q |
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| T |
32134458 |
gaattgttgctgaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattagacacgac |
32134557 |
T |
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| Q |
144 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttca--nnnnnnnngaaaggagaagttgttcattgtaaaggatgaagataagctta |
241 |
Q |
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| T |
32134558 |
acaattcagaacaaagttatgtttttcttaagaaacaaaagttgttcattttttttttgaaaggagaagttgttcattgtacaggatgaagataagctta |
32134657 |
T |
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| Q |
242 |
gtgctgctaatattg |
256 |
Q |
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||| ||||||||||| |
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| T |
32134658 |
gtggtgctaatattg |
32134672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32134396 - 32134444
Alignment:
| Q |
1 |
gagaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
49 |
Q |
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| T |
32134396 |
gagaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
32134444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 45511666 - 45511453
Alignment:
| Q |
44 |
gaattgttgctcaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattggacacgac |
143 |
Q |
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||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45511666 |
gaattgttgatgaagagggaagaaacaaagaatcctggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattagacacgac |
45511567 |
T |
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| Q |
144 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttca-nnnnnnnngaaaggagaagttgttcattgtaaaggatgaagataagcttag |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45511566 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttcatttttttttgaaaggagaagttgttcattgtacaggatgaagataagcttaa |
45511467 |
T |
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| Q |
243 |
tgctgctaatattg |
256 |
Q |
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|||||||||||||| |
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| T |
45511466 |
tgctgctaatattg |
45511453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45511728 - 45511680
Alignment:
| Q |
1 |
gagaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
49 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45511728 |
gagaaagagagaaattgagaaaagagtaaagaattgtgattttgaattg |
45511680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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