View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_198 (Length: 265)
Name: NF10049A_low_198
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_198 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 52478375 - 52478151
Alignment:
| Q |
23 |
caagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataattaacttataca |
122 |
Q |
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| T |
52478375 |
caagaagcaaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataatttacttataca |
52478276 |
T |
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| Q |
123 |
aataaaaaacggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactca |
222 |
Q |
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| T |
52478275 |
aataataaa-ggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactca |
52478177 |
T |
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| Q |
223 |
tgaccatgactatctaatgttaattt |
248 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52478176 |
tgaccatgactatctaatgttaattt |
52478151 |
T |
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