View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_2 (Length: 651)

Name: NF10049A_low_2
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_2
NF10049A_low_2
[»] chr2 (3 HSPs)
chr2 (10-651)||(41030845-41031497)
chr2 (386-438)||(41046305-41046357)
chr2 (516-592)||(41036882-41036958)


Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 10 - 651
Target Start/End: Original strand, 41030845 - 41031497
Alignment:
Q  10 catagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctcnnnnnnnaaagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  41030845 catagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctctttttttaaagt 41030944  T
Q  110 gaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcatgacacttgaataaaaactagctcta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41030945 gaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcatgagacttgaataaaaactagctcta 41031044  T
Q  210 ccttatcgtacaaaatgaaaataataattatgtaccgtataattctgagaagggacctagtctaagagggaactag-------tctaaggtttgtatgta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||       | |||||||||||||||    
T  41031045 ccttatcgtacaaaatgaaaataataattatgtaccgtataattctgagaagggacctagtctaagaggggcagagatgattttataaggtttgtatgta 41031144  T
Q  303 cgtgtcatgaaagttactctactatatacgtgttactttgcgtaatgtta----gagtcaaatgtggaatgagacgttgaatgtgataagctattaacaa 398  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  41031145 cgtgtcatgaaagttactctactatatacgtgttacttcgcgtaatgttacttagagtcaaatgtggaatgagacgttgaatgtgataagctattaacaa 41031244  T
Q  399 gactatagtaggctttggagtttctgttgtacaagccggctaagaatatataatactggtgtgacattatttctctagcagttgcaaccatagaagtttc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41031245 gactatagtaggctttggagtttctgttgtacaagccggctaagaatatataatactggtgtgacattatttctctagcagttgcaaccatagaagtttc 41031344  T
Q  499 tgctattttattacctgtatgatgtatcacatgttcaagttctatgacaagttttatcctgattttgtgtctcttttgttcattggtgacaaaagtggat 598  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41031345 tgctattttattacctgtatgatgtatcacatgttctagttctatgacaagttttatcctgattttgtgtctgttttgttcattggtgacaaaagtggat 41031444  T
Q  599 ttgaatgcattttgtatgactgattctagttaatagtgagttaaatgtaagtg 651  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41031445 ttgaatgcattttgtgtgactgattctagttaatagtgagttaaatgtaagtg 41031497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 41046305 - 41046357
Alignment:
Q  386 aagctattaacaagactatagtaggctttggagtttctgttgtacaagccggc 438  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  41046305 aagctattaataagactatagtaggctttggagtttccattgtacaagccggc 41046357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 592
Target Start/End: Original strand, 41036882 - 41036958
Alignment:
Q  516 tatgatgtatcacatgttcaagttctatgacaagttttatcctgattttgtgtctcttttgttcattggtgacaaaa 592  Q
    |||||| ||||||||||||| ||||  |||||||||||||| ||||||||||| | |||||||| |  |||||||||    
T  41036882 tatgatatatcacatgttcatgttccttgacaagttttatcatgattttgtgtgtattttgttcttccgtgacaaaa 41036958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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