View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_204 (Length: 262)
Name: NF10049A_low_204
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_204 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 48993751 - 48993496
Alignment:
| Q |
1 |
agcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaatt |
100 |
Q |
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| T |
48993751 |
agcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaatt |
48993652 |
T |
|
| Q |
101 |
cctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacccccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993651 |
cctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacccccta |
48993552 |
T |
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| Q |
201 |
gtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993551 |
gtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 22623979 - 22624233
Alignment:
| Q |
1 |
agcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaatt |
100 |
Q |
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|||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| ||||| |
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| T |
22623979 |
agcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcccaata |
22624078 |
T |
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| Q |
101 |
cctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacccccta |
200 |
Q |
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| T |
22624079 |
ccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcatacccccta |
22624178 |
T |
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| Q |
201 |
gtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
255 |
Q |
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||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624179 |
atataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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