View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_208 (Length: 261)
Name: NF10049A_low_208
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_208 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 45643255 - 45643012
Alignment:
| Q |
8 |
taactttattattgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaat |
107 |
Q |
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| T |
45643255 |
taactttattat-gacagtgttcaactatgtagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaat |
45643160 |
T |
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| Q |
108 |
tagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
207 |
Q |
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| T |
45643159 |
tagtacagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
45643060 |
T |
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| Q |
208 |
ctctttgttaaggttaagccttcttctgctgctccttctgcaacacca |
255 |
Q |
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| T |
45643059 |
ctctttgttaaggttaagccttcttctgctgctccttctgcaacacca |
45643012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 45703063 - 45703282
Alignment:
| Q |
8 |
taactttattatt--gacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattca |
105 |
Q |
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| T |
45703063 |
taactttattattatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattca |
45703162 |
T |
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| Q |
106 |
attagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggca |
202 |
Q |
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| T |
45703163 |
attagtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggca |
45703262 |
T |
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| Q |
203 |
tgaaactctttgttaaggtt |
222 |
Q |
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| T |
45703263 |
tgaaactctctgttaaggtt |
45703282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 45650508 - 45650283
Alignment:
| Q |
20 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
119 |
Q |
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| T |
45650508 |
tgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacag |
45650412 |
T |
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| Q |
120 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaag |
219 |
Q |
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| T |
45650411 |
cagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaa |
45650312 |
T |
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| Q |
220 |
gttaagccttcttctgctgctccttctgc |
248 |
Q |
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| T |
45650311 |
gttaaggcttcttctagtgcttcttctgc |
45650283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 45886889 - 45887094
Alignment:
| Q |
20 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
119 |
Q |
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| T |
45886889 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacgg |
45886988 |
T |
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| Q |
120 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgtt |
216 |
Q |
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| T |
45886989 |
tagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgtt |
45887088 |
T |
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| Q |
217 |
aaggtt |
222 |
Q |
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|||||| |
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| T |
45887089 |
aaggtt |
45887094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 30054843 - 30054756
Alignment:
| Q |
47 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
134 |
Q |
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| T |
30054843 |
ggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
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