View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_209 (Length: 260)
Name: NF10049A_low_209
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_209 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10783141 - 10782894
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10783141 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacccattttttgta |
10783042 |
T |
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| Q |
101 |
tatcttgcactaacggaatttattaaattcattatttgatgtcaaattgtactccaagaagttatggttaaattgtgtcacaaaatcaatatttagtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783041 |
tatcttgcactaacggaatttattaaattcattatttgatgtcaaactgtactccaagaagttatggttaaattgtgtcacaaaatcaatatttagtttg |
10782942 |
T |
|
| Q |
201 |
tgttatgggatgcaaatgcaatgagttggtttctatatggccaatatt |
248 |
Q |
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| T |
10782941 |
tgttatgggatgcaaatgcaatgagttggtttctatatgtccaatatt |
10782894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10782665 - 10782628
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaata |
38 |
Q |
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| T |
10782665 |
agaagaggtaaatctattttgtttttattctaaaaata |
10782628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 23438880 - 23438705
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgta |
100 |
Q |
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| T |
23438880 |
agaagaggtaaatctattttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcattagtagatatacattttttgta |
23438781 |
T |
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| Q |
101 |
tatcttgcactaacggaatttattaaatt-----cattatttgatgtcaaattgtactccaagaagttatggttaa |
171 |
Q |
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|||||||||||||||||||| |||| ||| || |||||||| |||||||||| |||||||||| || ||||| |
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| T |
23438780 |
tatcttgcactaacggaattgattacattagaagcaatatttgatatcaaattgtattccaagaagtcattgttaa |
23438705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 23438503 - 23438665
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgta |
100 |
Q |
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||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23438503 |
agaagaggtaaatctattttgctttcattataaaaatattttaattgatgtctttggaaaatatttttaagcattcaatagtagatacacattttttgta |
23438602 |
T |
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| Q |
101 |
tatcttgcactaacggaatttattaaatt-----cattatttgatgtcaaattgtactccaag |
158 |
Q |
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|||||||| ||||||||||| |||| ||| || |||||||| |||||||||| |||||| |
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| T |
23438603 |
tatcttgcgctaacggaattgattacattagaagcaatatttgatatcaaattgtattccaag |
23438665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 8674011 - 8674160
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttgta |
100 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8674011 |
agaagaggtaaatctattttgttttcgttctaaaaatattttaattgatgtgttttgaaaatatttttaagcattcaatagtagatacacattttttata |
8674110 |
T |
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| Q |
101 |
tatcttgcactaacggaatttattaaattcattatttgatgtcaaattgt |
150 |
Q |
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||||||| ||||||||||| |||| ||||| |||||||| | ||||||| |
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| T |
8674111 |
tatcttgtgctaacggaattgattacattcaatatttgatattaaattgt |
8674160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8674245 - 8674158
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattga--tgtgttttgaaaatatttttaagcattcaatagtagatacaca |
91 |
Q |
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||||||||||||||||| |||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8674245 |
agaagaggtaaatctattttgttttcattctagaaatagttt-attgatgtgtgttttgaaaata----taagcattcaatagtagatacaca |
8674158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 50508870 - 50508940
Alignment:
| Q |
178 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttctatatggccaatatt |
248 |
Q |
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| T |
50508870 |
tcacaaaatcaatatttagtttgtgttatgggatgcaaatgcaatgagttggtttgtatatgtccaatatt |
50508940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 50508309 - 50508350
Alignment:
| Q |
5 |
gaggtaaatctatgttgttttcattctaaaaatattttaatt |
46 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50508309 |
gaggtaaatctattttgttttcattctaaaaatattttaatt |
50508350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50509176 - 50509248
Alignment:
| Q |
1 |
agaagaggtaaatctatgttgttttcattctaaaaatattttaattgat---gtgttttgaaaatatttttaa |
70 |
Q |
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||||||||||||||||| ||||||| |||||||||||| || |||| || || |||||||||| ||||||| |
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| T |
50509176 |
agaagaggtaaatctattttgtttttattctaaaaataattcaattcatatagtattttgaaaatgtttttaa |
50509248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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