View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_211 (Length: 259)
Name: NF10049A_low_211
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_211 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 1881 - 1637
Alignment:
| Q |
9 |
gagatgaacttagaatgaagaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaact |
108 |
Q |
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| T |
1881 |
gagaagaacttagaaagatgaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaact |
1782 |
T |
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| Q |
109 |
caatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttacgccacc |
208 |
Q |
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| T |
1781 |
caatgacgcactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcaagacaccaagtattacataggccttacgccacc |
1682 |
T |
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| Q |
209 |
taatctaaactagaaagtaagcaaaaccaaaattaaagatacatt |
253 |
Q |
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| T |
1681 |
taatctaaactagaaagtaatcaaaaccaaaattaaagatacatt |
1637 |
T |
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Target: scaffold0177 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 30204 - 30061
Alignment:
| Q |
103 |
ggaactcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttac |
202 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |
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| T |
30204 |
ggaactcaatgagacactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcgagacaccaagtattatgaaacccttaa |
30105 |
T |
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| Q |
203 |
gccacctaatctaaactagaaagtaagcaaaaccaaaattaaag |
246 |
Q |
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| T |
30104 |
gccacctaatctaaactagaaagtaagaaaaaccaaaattaaag |
30061 |
T |
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