View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_218 (Length: 256)
Name: NF10049A_low_218
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_218 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 4236167 - 4235918
Alignment:
| Q |
1 |
taactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcaga |
100 |
Q |
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| T |
4236167 |
taaccggagacggaacaaacgatgcaccagcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcaga |
4236068 |
T |
|
| Q |
101 |
tattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236067 |
tattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaatta |
4235968 |
T |
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| Q |
201 |
acagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235967 |
acagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagc |
4235918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 30441333 - 30441396
Alignment:
| Q |
30 |
gcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagaga |
93 |
Q |
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| T |
30441333 |
gcattgatagaagctggtattggaatttccatgggaattcaaggtaccgaagttgcaaaagaga |
30441396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 6185291 - 6185042
Alignment:
| Q |
1 |
taactggagatggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcaga |
100 |
Q |
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| T |
6185291 |
taacaggagatggaacaaacgatgcaccggcattgaaagaagccgatatcggactttcaatgggaattcaaggtactgaagttgcaaaagagagttcaga |
6185192 |
T |
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| Q |
101 |
tattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6185191 |
tattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaacta |
6185092 |
T |
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| Q |
201 |
acagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagc |
250 |
Q |
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| T |
6185091 |
acagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagc |
6185042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 19593039 - 19592829
Alignment:
| Q |
12 |
ggaacaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatat |
111 |
Q |
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|||| ||| |||||| | ||| ||||||||||| |||||| |||||| |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
19593039 |
ggaagaaatgatgcatcagcactgaaagaagctaatattgaactttccatggaaattcaaggtaccgaagttgcaaaagagagctcagatattgttatat |
19592940 |
T |
|
| Q |
112 |
tagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgt |
211 |
Q |
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| T |
19592939 |
tagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattcaatt---------agtgaatgt |
19592849 |
T |
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| Q |
212 |
ggcagcacttgttataaatt |
231 |
Q |
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||||||||||||||| |||| |
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| T |
19592848 |
ggcagcacttgttatcaatt |
19592829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 38357097 - 38356883
Alignment:
| Q |
15 |
acaaacgatgcaccggcattgaaagaagctgatattggactttcaatgggaattcaaggtactgaagtagcaaaagagagttcagatattgttatattag |
114 |
Q |
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|||||||||||||| || || |||||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || || |||| |
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| T |
38357097 |
acaaacgatgcacctgccttaaaagaagctgatataggactttctatgggaatccaaggaaccgaagtcgccaaagaaagttccgatatcgtcatcttag |
38356998 |
T |
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| Q |
115 |
atgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggc |
214 |
Q |
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| T |
38356997 |
acgacaacttcaattctgttgcaactgttttaaggtggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgc |
38356898 |
T |
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| Q |
215 |
agcacttgttataaa |
229 |
Q |
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| T |
38356897 |
agcacttgtgataaa |
38356883 |
T |
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