View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_22 (Length: 442)
Name: NF10049A_low_22
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 37821678 - 37821240
Alignment:
| Q |
8 |
ttggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttc |
107 |
Q |
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| T |
37821678 |
ttggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttc |
37821579 |
T |
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| Q |
108 |
agttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgtcttttaacggtt |
207 |
Q |
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| T |
37821578 |
agttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggtt |
37821479 |
T |
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| Q |
208 |
gatactgtaatactattcatctcttacatatataatt------------atcatacataactatagcattttattaatgatatatgttaagagcaattcc |
295 |
Q |
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| T |
37821478 |
gatactgtaatactattcatctcttacatatataattatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattcc |
37821381 |
T |
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| Q |
296 |
aaaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctac |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37821380 |
aaaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctac |
37821281 |
T |
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| Q |
396 |
aaagttttaaatttttggtgtcattggtctcctatcatttc |
436 |
Q |
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| T |
37821280 |
aaagttttaaatttttggtgtcattggtctcctatcatttc |
37821240 |
T |
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