View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_220 (Length: 255)

Name: NF10049A_low_220
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_220
NF10049A_low_220
[»] chr5 (9 HSPs)
chr5 (12-235)||(26099226-26099449)
chr5 (177-226)||(25224814-25224863)
chr5 (177-226)||(25288970-25289019)
chr5 (33-121)||(25224928-25225016)
chr5 (33-121)||(25289084-25289172)
chr5 (33-121)||(25728232-25728320)
chr5 (177-226)||(25728385-25728434)
chr5 (39-112)||(25222582-25222655)
chr5 (39-112)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (33-121)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 26099226 - 26099449
Alignment:
Q  12 tgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgc 111  Q
    ||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26099226 tgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgc 26099325  T
Q  112 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||     
T  26099326 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtag 26099425  T
Q  212 cttcggaatcttgactgaggctcc 235  Q
    ||||||||||||||||||||||||    
T  26099426 cttcggaatcttgactgaggctcc 26099449  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
Q  177 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 226  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25224863 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25224814  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
Q  177 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 226  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25289019 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25288970  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
Q  33 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 121  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25225016 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25224928  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
Q  33 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 121  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25289172 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25289084  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
Q  33 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 121  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25728232 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25728320  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
Q  177 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 226  Q
    |||||| |||||||||||||||||||||| || ||||| |||||||||||    
T  25728385 tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac 25728434  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
Q  39 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 112  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25222582 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25222655  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
Q  39 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 112  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25286738 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25286811  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
Q  33 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 121  Q
    ||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| ||||  ||||||||||| | ||||||    
T  25618132 gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga 25618044  T

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