View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_221 (Length: 255)
Name: NF10049A_low_221
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_221 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 4124241 - 4123990
Alignment:
| Q |
4 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
103 |
Q |
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| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
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| Q |
104 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
203 |
Q |
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| T |
4124141 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
4124042 |
T |
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| Q |
204 |
aacaatctgggatagtttcacacacccagcagatgcagctgttccaacaatg |
255 |
Q |
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| T |
4124041 |
aacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatg |
4123990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 4153591 - 4153340
Alignment:
| Q |
4 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
103 |
Q |
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| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
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| Q |
104 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
203 |
Q |
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| T |
4153491 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagc |
4153392 |
T |
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| Q |
204 |
aacaatctgggatagtttcacacacccagcagatgcagctgttccaacaatg |
255 |
Q |
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| T |
4153391 |
aacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatg |
4153340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 4134783 - 4134541
Alignment:
| Q |
7 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
106 |
Q |
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| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
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| Q |
107 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
206 |
Q |
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| || || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
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| T |
4134683 |
tcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4134584 |
T |
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| Q |
207 |
aatctgggatagtttcacacacccagcagatgcagctgttcca |
249 |
Q |
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| T |
4134583 |
aatctgggatagtttcacacaccctgcagattcagctgttcca |
4134541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 4145585 - 4145343
Alignment:
| Q |
7 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
106 |
Q |
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| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
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| Q |
107 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
206 |
Q |
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| T |
4145485 |
gcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4145386 |
T |
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| Q |
207 |
aatctgggatagtttcacacacccagcagatgcagctgttcca |
249 |
Q |
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| T |
4145385 |
aatctgggatagtttcacacacccttcagattcagctgttcca |
4145343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 4163950 - 4163697
Alignment:
| Q |
4 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
103 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
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| Q |
104 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
197 |
Q |
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|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
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| Q |
198 |
tggagcaacaatctgggatagtttcacacacccagcagatgcagctgttccaac |
251 |
Q |
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| T |
4163750 |
tagatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaac |
4163697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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