View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_223 (Length: 253)

Name: NF10049A_low_223
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_223
NF10049A_low_223
[»] chr5 (2 HSPs)
chr5 (79-247)||(41222154-41222322)
chr5 (11-81)||(41222675-41222747)
[»] chr8 (1 HSPs)
chr8 (97-226)||(13375861-13375997)
[»] chr6 (3 HSPs)
chr6 (97-226)||(16985223-16985359)
chr6 (114-151)||(16795006-16795043)
chr6 (166-226)||(16779031-16779091)
[»] chr3 (3 HSPs)
chr3 (160-226)||(38942998-38943064)
chr3 (115-226)||(7055522-7055640)
chr3 (160-226)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (186-226)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 79 - 247
Target Start/End: Complemental strand, 41222322 - 41222154
Alignment:
Q  79 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41222322 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac 41222223  T
Q  179 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41222222 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat 41222154  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 41222747 - 41222675
Alignment:
Q  11 aatatttttataaagtgaccatatatttaagatatatat--cgtgtcacaataaatttacattacattaattg 81  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  41222747 aatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg 41222675  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
Q  97 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat 189  Q
    |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||       ||| ||||||| ||| |||||| ||||||| | ||||    
T  13375861 caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat 13375960  T
Q  190 tcttgaagagaagtcatggcaccctaccagtccggca 226  Q
      |||||||| ||||||||||||| ||||||| ||||    
T  13375961 ctttgaagagtagtcatggcacccaaccagtctggca 13375997  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
Q  97 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaat 189  Q
    |||||||| | ||| || |||| ||||||||||||  ||||||||||||||||||||       || || |||| ||||||||| ||| |||| | ||||    
T  16985223 caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat 16985322  T
Q  190 tcttgaagagaagtcatggcaccctaccagtccggca 226  Q
    |||||||||||||||||||||||| | ||||| ||||    
T  16985323 tcttgaagagaagtcatggcacccaaacagtctggca 16985359  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
Q  114 caatacttaacttttgcatgtttcggagttgctgaaag 151  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaag 16795043  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 16779031 - 16779091
Alignment:
Q  166 tttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 226  Q
    ||||||||||||  ||| | |||| ||||||||||||||||||||||| | ||||| ||||    
T  16779031 tttggaaactcatagatgtctaatacttgaagagaagtcatggcacccaaacagtctggca 16779091  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
Q  160 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 226  Q
    |||| ||| |||||| ||||||| ||||||  |||||||||||||||||||||| ||||||||||||    
T  38942998 cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca 38943064  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
Q  115 aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaattcttgaagagaagtcatg 207  Q
    ||||||||||||||| | |||| |||||||||||| |||       |||||||||| | | ||||||  |  ||| |||||| |||||||||||||||||    
T  7055640 aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg 7055541  T
Q  208 gcaccctaccagtccggca 226  Q
    |||||| ||||||||||||    
T  7055540 gcacccaaccagtccggca 7055522  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
Q  160 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggcaccctaccagtccggca 226  Q
    |||| ||||||||||| |  ||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  38941663 cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca 38941597  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 6375 - 6415
Alignment:
Q  186 taattcttgaagagaagtcatggcaccctaccagtccggca 226  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  6375 taatacttgaagagaagtcatggcacccaaccagtccggca 6415  T

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