View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_23 (Length: 441)
Name: NF10049A_low_23
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 38089334 - 38088925
Alignment:
| Q |
8 |
tatcagagactcaagtgagtataaaaacagtttatgaagaatccagttgggaggacagtgacccttctgttttcaaaatgactgttttgactgacaccat |
107 |
Q |
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| T |
38089334 |
tatcagagactcaagtgagtacaaaaacagtttatgaagaatccagttgggaggacagtgacccttctgttttcaaaatgactgttttgactgacaccat |
38089235 |
T |
|
| Q |
108 |
tctaaaaggagaataccaaattacaaatggttatggtccagacaaagcttccaagatcatgagggtaattaagataccttattgtcttttttgaaaaaga |
207 |
Q |
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| T |
38089234 |
tctaaaaggagaataccaaattacaaatggttatggtccagacaaagcttccaagatcatgagggtaattaagataccttattgtcttttttgaaaaaga |
38089135 |
T |
|
| Q |
208 |
acaagaaccagcattctagattttaagtgtatgtttaaattaacacgatcttaacaaaattacgatggagccgtgattctactagtatcaatatcaatac |
307 |
Q |
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| T |
38089134 |
acaagaaccagcattctagattttaagtgtatgtttaaattaacacgaccttaacaaaattacgatggagccgtgattctacgagtatcaatatcaatac |
38089035 |
T |
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| Q |
308 |
aacatgcactaaattattattatggtcgcgcgtcccaatttggttgattgttagtgaagtaatctcaattgttatttgtcctgcaatgttgaaacataaa |
407 |
Q |
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| T |
38089034 |
aacatacactaaattattattatggtcgcgcgtcccaatttggttgattgttagtgaagtaatctcaattgttatttgtcctgcaatgttgaaac--aaa |
38088937 |
T |
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| Q |
408 |
aaactataatat |
419 |
Q |
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| T |
38088936 |
aaactataatat |
38088925 |
T |
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