View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_231 (Length: 250)

Name: NF10049A_low_231
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_231
NF10049A_low_231
[»] chr7 (5 HSPs)
chr7 (1-97)||(4834426-4834523)
chr7 (158-244)||(29912914-29913000)
chr7 (152-206)||(26247069-26247123)
chr7 (166-218)||(18290923-18290975)
chr7 (155-193)||(29865648-29865686)
[»] chr8 (16 HSPs)
chr8 (158-244)||(16249700-16249786)
chr8 (158-244)||(16312910-16312996)
chr8 (158-244)||(34801155-34801241)
chr8 (176-224)||(16311460-16311508)
chr8 (166-223)||(16221272-16221329)
chr8 (176-224)||(16248247-16248295)
chr8 (176-224)||(34802611-34802659)
chr8 (176-224)||(37249388-37249436)
chr8 (158-222)||(37250829-37250893)
chr8 (166-216)||(18431231-18431281)
chr8 (168-216)||(15342741-15342789)
chr8 (168-216)||(15431806-15431854)
chr8 (168-216)||(15523110-15523158)
chr8 (158-206)||(16311189-16311237)
chr8 (170-218)||(17887626-17887674)
chr8 (158-206)||(37249148-37249196)
[»] chr5 (7 HSPs)
chr5 (158-244)||(8128094-8128180)
chr5 (158-244)||(29865535-29865621)
chr5 (158-244)||(4062482-4062568)
chr5 (158-244)||(7332601-7332687)
chr5 (176-217)||(29864091-29864132)
chr5 (176-224)||(4063343-4063391)
chr5 (158-206)||(29863813-29863861)
[»] chr3 (6 HSPs)
chr3 (158-244)||(19817065-19817151)
chr3 (166-224)||(52752633-52752691)
chr3 (171-222)||(20934675-20934726)
chr3 (166-217)||(52754736-52754787)
chr3 (166-216)||(14240968-14241018)
chr3 (166-206)||(35686153-35686193)
[»] chr2 (3 HSPs)
chr2 (152-216)||(13439003-13439067)
chr2 (168-216)||(45054466-45054514)
chr2 (158-206)||(5786592-5786640)
[»] chr1 (6 HSPs)
chr1 (176-224)||(17001873-17001921)
chr1 (160-224)||(49878699-49878763)
chr1 (176-224)||(34161330-34161378)
chr1 (158-216)||(17006155-17006213)
chr1 (178-216)||(3417504-3417542)
chr1 (168-209)||(31089981-31090022)
[»] chr4 (7 HSPs)
chr4 (155-222)||(55050390-55050457)
chr4 (160-216)||(11793675-11793731)
chr4 (158-244)||(26289659-26289745)
chr4 (176-224)||(26288212-26288260)
chr4 (166-217)||(17449738-17449789)
chr4 (166-224)||(13917824-13917881)
chr4 (176-224)||(55051228-55051276)
[»] chr6 (6 HSPs)
chr6 (158-244)||(23409750-23409836)
chr6 (166-218)||(21055833-21055885)
chr6 (155-244)||(4791264-4791355)
chr6 (170-224)||(3531708-3531762)
chr6 (159-200)||(9451974-9452015)
chr6 (158-206)||(23408001-23408049)
[»] scaffold0119 (1 HSPs)
scaffold0119 (166-244)||(40917-40995)
[»] scaffold0169 (1 HSPs)
scaffold0169 (168-209)||(4853-4894)
[»] scaffold0159 (1 HSPs)
scaffold0159 (158-206)||(30965-31013)
[»] scaffold0021 (1 HSPs)
scaffold0021 (168-216)||(128726-128774)


Alignment Details
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4834426 - 4834523
Alignment:
Q  1 gtgaagatggagagtaaattaagagtgtgattgtataaaggatttaggaggggagtggatgatttgc-ttttcttttcgaaattatggatattataac 97  Q
    ||||||||||| ||||||||||| |||||||||||| || | ||||||| ||| ||| |||| |||| |||| |||| ||||||||||||||||||||    
T  4834426 gtgaagatggaaagtaaattaagggtgtgattgtatgaaaggtttaggaagggtgtgaatgacttgctttttgtttttgaaattatggatattataac 4834523  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 29913000 - 29912914
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  29913000 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 29912914  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 26247069 - 26247123
Alignment:
Q  152 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  26247069 catataattttaaatgtctaataaacatgtattttgtcaactcagcataacacat 26247123  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 18290923 - 18290975
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 218  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  18290923 tgtctaataaacatgtattttgtaaattcatcataacacatgtacatttttca 18290975  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 29865648 - 29865686
Alignment:
Q  155 atgattttaattgtctaataaacatgtattttgtcaatt 193  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  29865648 atgactttaaatgtctaataaacatgtattttgtcaatt 29865686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 16249700 - 16249786
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  16249700 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 16249786  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 16312910 - 16312996
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  16312910 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 16312996  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 34801241 - 34801155
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  34801241 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 34801155  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 16311460 - 16311508
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  16311460 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 16311508  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 16221272 - 16221329
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgt 223  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| |||||    
T  16221272 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgt 16221329  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 16248247 - 16248295
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  16248247 acatgtattttttcaattcagcataacaaatctacaattttctattgtc 16248295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 34802659 - 34802611
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  34802659 acatgtattttatcaattcagcataacaaatctacaattttctattgtc 34802611  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 37249388 - 37249436
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  37249388 acatgtattttgtcaattcagcataacaaatctataattttctattgtc 37249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 37250829 - 37250893
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 222  Q
    ||||||| | ||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  37250829 attttaaatatctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattg 37250893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 18431231 - 18431281
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||||| |||||||||||| |  ||| ||||||||||||||||||||    
T  18431231 tgtctaataagcatgtattttgttacctcatcataatacatctacaatttt 18431281  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 15342741 - 15342789
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15342741 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15342789  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 15431806 - 15431854
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15431806 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15431854  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 15523110 - 15523158
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15523110 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15523158  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 16311189 - 16311237
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  16311189 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 16311237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 17887674 - 17887626
Alignment:
Q  170 taataaacatgtattttgtcaattcagcataatacatctacaattttca 218  Q
    ||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  17887674 taataaacatgtattttgtaaattcatcataacacatgtacatttttca 17887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 37249148 - 37249196
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  37249148 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 37249196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 8128094 - 8128180
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  8128094 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 8128180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 29865535 - 29865621
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||| | |||||||| |||| | || ||| ||||| ||||||    
T  29865535 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatatgcaattttccattgccacttgccgccaaagtccaaa 29865621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 4062568 - 4062482
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| | ||||||||||||||||||| | || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  4062568 attttaaatctctaataaacatgtattttctgaactcagcataacacatctgcaattttctattgccacttgccgccaaagtccaaa 4062482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 7332601 - 7332687
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||| ||||||||| || ||| ||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  7332601 attttaaatgtctaataaacacgtattttgtgaactcatcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 7332687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 29864091 - 29864132
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttc 217  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  29864091 acatgtattttgtcaattcagcataacaaatctacaattttc 29864132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 4063391 - 4063343
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||    
T  4063391 acatgtattttgtcaattcagcatagcaaatctacaattttccattgtc 4063343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 29863813 - 29863861
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  29863813 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 29863861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 19817065 - 19817151
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  19817065 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 19817151  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 52752691 - 52752633
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| ||||||    
T  52752691 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgtc 52752633  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 20934675 - 20934726
Alignment:
Q  171 aataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 222  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||| ||||    
T  20934675 aataaatatgtattttgtcaattcatcaaaatacatctacatttttctattg 20934726  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 52754787 - 52754736
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 217  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||||| |||||    
T  52754787 tgtctaataaatatgtattttgccaactcagcataacacatctacatttttc 52754736  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 14240968 - 14241018
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||||||||||||||||||||| ||| ||||| || |||||| ||||    
T  14240968 tgtctaataaacatgtattttgtcaactcaacataacacttctacattttt 14241018  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 35686193 - 35686153
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  35686193 tgtctaataaacatgtattttgttaattcatcataacacat 35686153  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 13439003 - 13439067
Alignment:
Q  152 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    ||||| ||||||| ||||||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  13439003 catataattttaaatgtctaataaatatgtattttgtttattcagcataacacatctacaatttt 13439067  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 45054466 - 45054514
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  45054466 tctaataaacatgtattttgtcaactcaacataacacatctacattttt 45054514  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 5786592 - 5786640
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  5786592 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 5786640  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 17001873 - 17001921
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17001873 acatgtattttgtcaattcagcataataaatctacaattttccattgtc 17001921  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 49878763 - 49878699
Alignment:
Q  160 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||||| | |||| |||||||    
T  49878763 tttaattgtctaataaacatgtattttgtaaactcagcataacacatctatattttttaattgtc 49878699  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 34161378 - 34161330
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  34161378 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 34161330  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 17006155 - 17006213
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    ||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  17006155 attttaaatgtctaataaacatgtattttttgaactcagcataacacatctgcaatttt 17006213  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 3417504 - 3417542
Alignment:
Q  178 atgtattttgtcaattcagcataatacatctacaatttt 216  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  3417504 atgtattttgtcaattcagcataatgcatcaacaatttt 3417542  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 31089981 - 31090022
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatcta 209  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  31089981 tctaataaacatgtattttatcaattcaacataacacatcta 31090022  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 55050457 - 55050390
Alignment:
Q  155 atgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 222  Q
    |||||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||| ||||    
T  55050457 atgattttaaatgtctaataaacatgtattttctgaactcagcataacacatctgcaattttccattg 55050390  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 11793731 - 11793675
Alignment:
Q  160 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    ||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  11793731 tttaattgtctaataaacatgtattttgttagttcaacataacacatctgcaatttt 11793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 26289659 - 26289745
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||| |||||||||||| |||||| || ||||||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  26289659 attttaaatgtgtaataaacatgtcttttgtgaactcagcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 26289745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 26288212 - 26288260
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||||||||| | |||||| |||||| ||||||    
T  26288212 acatgtattttgtcaattcagcataacaaatctacgattttcgattgtc 26288260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 17449789 - 17449738
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 217  Q
    |||||||| ||| ||||||||||||| | |||||||| ||||||||||||||    
T  17449789 tgtctaattaacgtgtattttgtcaacttagcataatgcatctacaattttc 17449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 13917881 - 13917824
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    ||||||||||||||||||||||| |||||| ||||| |||| ||| |||||| ||||||    
T  13917881 tgtctaataaacatgtattttgttaattcatcataacacatgtac-attttccattgtc 13917824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 55051276 - 55051228
Alignment:
Q  176 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  55051276 acatgtattttgtcaattcaacatagcaaatctacaattttccattgtc 55051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 23409750 - 23409836
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  23409750 attttaaatgtctaataaacatgtattttgtgaactcatcataacacatctgcaattttccattgccacttgccgccaaagtccaaa 23409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 21055833 - 21055885
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 218  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  21055833 tgtctaataaacatgtattttgttaattcatcataacacatgtacatttttca 21055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 4791264 - 4791355
Alignment:
Q  155 atgattttaa-ttgtctaataaacatgta-ttttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    |||||||||| ||||||||||| ||| || ||||||||| ||||||||| ||||| ||||||| ||||| || || ||| ||||| ||||||    
T  4791264 atgattttaaattgtctaataagcatatatttttgtcaactcagcataagacatcgacaatttacaattttcacttgccaccaaaatccaaa 4791355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 3531708 - 3531762
Alignment:
Q  170 taataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 224  Q
    |||||||||| |||||||||||  || ||||| || |||||||||||||||||||    
T  3531708 taataaacatatattttgtcaacccaacataacacttctacaattttcaattgtc 3531762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 9451974 - 9452015
Alignment:
Q  159 ttttaattgtctaataaacatgtattttgtcaattcagcata 200  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  9451974 ttttaaatgtctaataaacatgtattttgtgaactcagcata 9452015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 23408001 - 23408049
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  23408001 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 23408049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 40995 - 40917
Alignment:
Q  166 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtccctcgcccccaaactccaaa 244  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| |||| | || ||| ||||| ||||||    
T  40995 tgtctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattgccacttgccgccaaagtccaaa 40917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 4894 - 4853
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatcta 209  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4894 tctaataaacatgtattttgtcaactcagcataaaacatcta 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 30965 - 31013
Alignment:
Q  158 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 206  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  30965 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 31013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 128726 - 128774
Alignment:
Q  168 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 216  Q
    ||||||||||||||||||||||||  || ||||| ||||||||| ||||    
T  128726 tctaataaacatgtattttgtcaaaacatcataacacatctacattttt 128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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