View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_237 (Length: 250)
Name: NF10049A_low_237
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_237 |
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| [»] chr2 (5 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2462357 - 2462599
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462357 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
2462456 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattat |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
2462457 |
tggtggccgttacggggaaaatctagcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattat |
2462556 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggacaagtgtgtggccattata |
250 |
Q |
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| T |
2462557 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattata |
2462599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 3063640 - 3063398
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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| T |
3063640 |
ttggtgttggagatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
3063541 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattat |
207 |
Q |
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| T |
3063540 |
tggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattat |
3063441 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggacaagtgtgtggccattata |
250 |
Q |
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| T |
3063440 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattata |
3063398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 2466411 - 2466647
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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| T |
2466411 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgctcaagactaagctaatcaacacaagggtgattgtcaactgatccactcc----- |
2466505 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattat |
207 |
Q |
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||||||||||||||||| ||||| ||| | ||| | || ||| | |||||| |||||||||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
2466506 |
-ggtggccgttacggggagaatctcgcgggtagcaccggagacttaagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattat |
2466604 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggacaagtgtgtggccattata |
250 |
Q |
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| T |
2466605 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattata |
2466647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 2457787 - 2458021
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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|||||||||||||| |||| |||||||||| | |||||| | |||||||| ||||||||||| ||||| ||||||||||| ||||| |||||| |
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| T |
2457787 |
ttggtgttgcaaatgttgtctgggacaataatcttgctactgttgcccaaaactatgctaattcacgcaggggtgattgtcgactgacccactc------ |
2457880 |
T |
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| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattat |
207 |
Q |
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|||||||||||||||||| ||||| || ||||| | || ||| |||||||||||||||||||||||||||||| |||||||||| | |||||| | ||| |
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| T |
2457881 |
tggtggccgttacggggagaatctcgcagggagcaccggagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactat |
2457980 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggacaagtgtgtggccatta |
248 |
Q |
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| T |
2457981 |
aatagtaacacatgtgcttctggtaaagtgtgtggccatta |
2458021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 2469742 - 2469947
Alignment:
| Q |
17 |
caaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccg |
116 |
Q |
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||||||||||||||||||| | |||||| |||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
2469742 |
caaatattgtttgggacaacaaagttgctgcttttgcaaaaaactatgctaatcaacgcaagg---attgtcaactggtccactctggtggtggtggccg |
2469838 |
T |
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| Q |
117 |
ttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattataatagtaac |
216 |
Q |
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|||||| || ||| | ||| |||| ||||| ||||||||||| ||| || |||| |||||||| | |||| ||| |||||||||||| |||||| |
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| T |
2469839 |
ttacggagagaatatcgcggagagcactggcaacatgagtggcgtagaagcggtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaat |
2469938 |
T |
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| Q |
217 |
acatgtgct |
225 |
Q |
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|||||||| |
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| T |
2469939 |
tcatgtgct |
2469947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 18015680 - 18015922
Alignment:
| Q |
8 |
ttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
107 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015680 |
ttggtgttggagatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtgg |
18015779 |
T |
|
| Q |
108 |
tggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggcacagatgcagtgaggttgtgggggaatgagaaagatgactatgattat |
207 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||| ||||| |
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| T |
18015780 |
tggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattat |
18015879 |
T |
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| Q |
208 |
aatagtaacacatgtgcttctggacaagtgtgtggccattata |
250 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18015880 |
aatagtaacacatgtgcttctggtaaagtgtgtggccattata |
18015922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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