View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_238 (Length: 250)
Name: NF10049A_low_238
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_238 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 41551207 - 41550978
Alignment:
| Q |
13 |
aatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcnnnnnnnnnnnntaagaataagatgcattgaacaaacattgcaagattatg |
112 |
Q |
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| T |
41551207 |
aatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcaaaaataaaaaataagaataagatgcattgaacaaacattgcaagattatg |
41551108 |
T |
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| Q |
113 |
ataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttcgcaagcttatcaaaattcttctgcac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41551107 |
ataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttcgcaagcttatcaaaattcttctgcac |
41551008 |
T |
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| Q |
213 |
ttcgttccacgcatcaacaccgttggattt |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41551007 |
ttcgttccacgcatcaacaccgttggattt |
41550978 |
T |
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