View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_239 (Length: 250)

Name: NF10049A_low_239
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_239
NF10049A_low_239
[»] chr8 (10 HSPs)
chr8 (6-205)||(61451-61650)
chr8 (6-202)||(1365829-1366025)
chr8 (75-205)||(39255673-39255803)
chr8 (75-203)||(44751607-44751735)
chr8 (87-141)||(26492093-26492147)
chr8 (75-112)||(12351828-12351865)
chr8 (149-202)||(39254787-39254840)
chr8 (162-202)||(62248-62288)
chr8 (161-203)||(41859309-41859351)
chr8 (162-202)||(44752578-44752618)
[»] chr4 (18 HSPs)
chr4 (6-203)||(47198604-47198801)
chr4 (6-202)||(28683508-28683703)
chr4 (75-203)||(55159988-55160115)
chr4 (149-202)||(25371540-25371593)
chr4 (76-159)||(43737636-43737719)
chr4 (149-196)||(55159186-55159233)
chr4 (162-204)||(28684240-28684282)
chr4 (161-200)||(3848585-3848624)
chr4 (140-195)||(37275095-37275150)
chr4 (161-202)||(36865724-36865765)
chr4 (154-202)||(38694954-38695002)
chr4 (152-203)||(42544487-42544538)
chr4 (161-203)||(11417686-11417728)
chr4 (161-203)||(29651339-29651381)
chr4 (162-204)||(47199403-47199445)
chr4 (161-202)||(11417944-11417985)
chr4 (161-197)||(3847891-3847927)
chr4 (162-202)||(10424123-10424163)
[»] chr5 (9 HSPs)
chr5 (6-202)||(13655512-13655708)
chr5 (76-141)||(4909593-4909658)
chr5 (149-203)||(13654932-13654986)
chr5 (161-204)||(8204118-8204161)
chr5 (154-197)||(33001937-33001980)
chr5 (161-203)||(33002823-33002865)
chr5 (161-202)||(15184024-15184065)
chr5 (168-197)||(39167454-39167483)
chr5 (161-202)||(39950404-39950445)
[»] chr2 (7 HSPs)
chr2 (75-203)||(5276464-5276592)
chr2 (161-206)||(21471013-21471058)
chr2 (170-205)||(45139689-45139724)
chr2 (162-204)||(14574007-14574049)
chr2 (161-202)||(21471961-21472002)
chr2 (154-203)||(37543257-37543306)
chr2 (162-202)||(13134318-13134358)
[»] chr1 (15 HSPs)
chr1 (75-202)||(37874064-37874191)
chr1 (75-203)||(48869768-48869896)
chr1 (75-202)||(35615767-35615893)
chr1 (75-189)||(17496083-17496197)
chr1 (154-206)||(48972445-48972497)
chr1 (168-202)||(8560839-8560873)
chr1 (149-203)||(35616770-35616824)
chr1 (161-203)||(51987826-51987868)
chr1 (161-206)||(51974433-51974478)
chr1 (154-202)||(193850-193898)
chr1 (161-202)||(16270207-16270248)
chr1 (161-202)||(23440872-23440913)
chr1 (161-202)||(51988471-51988512)
chr1 (154-202)||(23440617-23440665)
chr1 (154-202)||(48971705-48971753)
[»] chr3 (11 HSPs)
chr3 (75-202)||(17226968-17227095)
chr3 (149-202)||(17227943-17227996)
chr3 (160-208)||(41755493-41755541)
chr3 (154-197)||(32490195-32490238)
chr3 (161-204)||(36750444-36750487)
chr3 (161-195)||(49757189-49757223)
chr3 (165-202)||(19132563-19132600)
chr3 (154-203)||(44687163-44687212)
chr3 (85-141)||(4486555-4486611)
chr3 (161-197)||(38922748-38922784)
chr3 (154-202)||(38923665-38923713)
[»] chr6 (9 HSPs)
chr6 (75-201)||(9573636-9573762)
chr6 (161-202)||(7531829-7531870)
chr6 (154-202)||(15083318-15083366)
chr6 (161-203)||(7193337-7193379)
chr6 (170-203)||(7532456-7532489)
chr6 (149-202)||(9574566-9574619)
chr6 (161-202)||(33480635-33480676)
chr6 (161-197)||(22582486-22582522)
chr6 (161-197)||(22587317-22587353)
[»] scaffold1037 (1 HSPs)
scaffold1037 (76-197)||(2034-2155)
[»] scaffold1031 (1 HSPs)
scaffold1031 (76-197)||(2152-2273)
[»] chr7 (15 HSPs)
chr7 (161-201)||(42455036-42455076)
chr7 (154-197)||(7677422-7677465)
chr7 (161-205)||(41194510-41194554)
chr7 (92-143)||(23683461-23683512)
chr7 (161-204)||(38778852-38778895)
chr7 (97-143)||(19737901-19737947)
chr7 (161-203)||(37468909-37468951)
chr7 (121-203)||(47331920-47332002)
chr7 (161-202)||(668179-668220)
chr7 (121-206)||(4984805-4984889)
chr7 (161-202)||(17145622-17145663)
chr7 (161-202)||(37469012-37469053)
chr7 (161-202)||(38779570-38779611)
chr7 (121-206)||(45887947-45888032)
chr7 (161-197)||(7677816-7677852)
[»] scaffold0311 (1 HSPs)
scaffold0311 (161-203)||(167-209)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 61650 - 61451
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61650 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 61551  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |||||||    
T  61550 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacctaa 61451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 1366025 - 1365829
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1366025 agaaggaacataagaaggacaaagataagaaaaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 1365926  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||| ||||    
T  1365925 agactattgtaacagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 39255673 - 39255803
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||    
T  39255673 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaggaaagactttcccatggtgggaaaga 39255772  T
Q  175 agtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||| |||||||| ||||||| |||||||    
T  39255773 agtctcatttcccaagttaaatgccacctaa 39255803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 44751735 - 44751607
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||| | |||||||    
T  44751735 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaaaaaagactttcccatgatgggaaaga 44751636  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| ||||||| |||||    
T  44751635 agtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 26492147 - 26492093
Alignment:
Q  87 ataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| | ||||||||    
T  26492147 ataaaaatctagtgttgagagactattgtaatagtgtactctttatgtgatccaa 26492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 12351828 - 12351865
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactat 112  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12351828 gaagatagtaagataaaaatctagtgttgagagactat 12351865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 39254840 - 39254787
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||||| ||||    
T  39254840 aaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 62248 - 62288
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  62248 atggtgggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 41859351 - 41859309
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  41859351 catggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 44752578 - 44752618
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  44752578 atggtgggaaagaagtctcctttcccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 47198801 - 47198604
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  47198801 agaatgaacataagaaagacaaagataagaagaaaaaggtggaaaagaatccaagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 47198702  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  47198701 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 28683703 - 28683508
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683703 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 28683604  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||| ||||||||||||| ||||    
T  28683603 agactattgtaatagtgcgttctttgtatgatccaatggttagaaaa-actttttcataatgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 55159988 - 55160115
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||  |||| |    
T  55159988 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttatatgatccaatgattagaaaagactttcccatggtgagaaa-a 55160086  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||||||||||| |||||    
T  55160087 agtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 25371540 - 25371593
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  25371540 aaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 43737719 - 43737636
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttt 159  Q
    |||||||||| |||| |||| |||||| |||| |||| ||||||||||||||||| |||||||||||  ||| |||| ||||||    
T  43737719 aagatagtaatataaaaatccagtgttaagaggctatagtaatagtgtgttctttatatgatccaataattataaaacactttt 43737636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 55159233 - 55159186
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaat 196  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  55159233 aaaagactttcccatggtaggaaagaagtctcctttcccaaattaaat 55159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 28684240 - 28684282
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  28684240 atggtaggaaaaaagtctcctttcccaaattaaatgtcaccta 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 3848585 - 3848624
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtca 200  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  3848585 catggtgggaaagaagtctcctttcccaaattaaatgtca 3848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 37275150 - 37275095
Alignment:
Q  140 aatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaa 195  Q
    |||||||  |||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  37275150 aatggtttaaaaaaactttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 36865724 - 36865765
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  36865724 catggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 42544538 - 42544487
Alignment:
Q  152 agactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||| |||||| ||||| |||||| ||||||||||||||||| |||||    
T  42544538 agacttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 11417728 - 11417686
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  11417728 catggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 29651339 - 29651381
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  29651339 catggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 47199403 - 47199445
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||    
T  47199403 atggtgggaaagaagtctcttttcccaaattaaatgccaccta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 11417944 - 11417985
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  11417944 catggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3847927 - 3847891
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  3847927 catggtgggaaaaaagtctcctttcccaaattaaatg 3847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 10424163 - 10424123
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  10424163 atggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 13655512 - 13655708
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||  |||||||||    
T  13655512 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcgcaattttaatggttagtgaagatagtaagataagaattcagtgttgag 13655611  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||||||||||||| |||||||||||||||| ||||    
T  13655612 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 4909593 - 4909658
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  4909593 aagatggtgagataaaaatctagtgttgagagactattgtaatagtgtgctctttatgtgatccaa 4909658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 13654986 - 13654932
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  13654986 aaaagactttcctatggtgggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 8204161 - 8204118
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  8204161 catggtgggaaagaactctcctttcccaaattaaatggcaccta 8204118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 33001980 - 33001937
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| |||||| |||||||| |||||||||||||||||||||    
T  33001980 acttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 33002823 - 33002865
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  33002823 catggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 15184024 - 15184065
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  15184024 catggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 39167454 - 39167483
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatg 197  Q
    ||||||||||||||||||||||||||||||    
T  39167454 ggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 39950445 - 39950404
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  39950445 catggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 5276592 - 5276464
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  5276592 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcccatggtgggaaaga 5276493  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| ||||||| |||||    
T  5276492 agtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 21471058 - 21471013
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  21471058 catggtgggaaagaactctcctttcccaaattaaatggcacctaaa 21471013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 45139724 - 45139689
Alignment:
Q  170 aaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||||||||||||||||||||||||| |||||||    
T  45139724 aaagaagtctcctttcccaaattaaatgccacctaa 45139689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 14574007 - 14574049
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||    
T  14574007 atggtgggaaagaactctcctttcccaaattaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 21471961 - 21472002
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  21471961 catggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 37543306 - 37543257
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||| |||||||||||| | |||||||| |||||||| |||||    
T  37543306 actttttcatgataggaaagaagtttactttcccatattaaatggcacct 37543257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 13134358 - 13134318
Alignment:
Q  162 atggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||||||| ||||||||||||||||||||| ||||    
T  13134358 atggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 37874191 - 37874064
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||| |||||||    
T  37874191 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagtaaagactttcccatggtgggaaaga 37874092  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||    
T  37874091 agtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 48869896 - 48869768
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||| | |||||    
T  48869896 gaagatagtatgataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaagattttcccatggtggaaaaga 48869797  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| |||||||||||||    
T  48869796 agtctcctttcccaagttaaatgtcacct 48869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 35615893 - 35615767
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||  |||||| |||||||    
T  35615893 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaaga-attcccatggtgggaaaga 35615795  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||| |||| ||||||| ||||    
T  35615794 agtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 17496083 - 17496197
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||  ||||| | | |||    
T  17496083 gaagatagtaagataataatctagtgtggagagactattgtaatagtgtgttctttatatgatccaatgattaaaaaacacttttctatggtggaataga 17496182  T
Q  175 agtctcctttcccaa 189  Q
    |||||||||||||||    
T  17496183 agtctcctttcccaa 17496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 48972445 - 48972497
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||| |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  48972445 acttttccatggtgggaaagaactctcctttcccaaattaaatggcacctaaa 48972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 8560873 - 8560839
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||||||||||    
T  8560873 ggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 35616770 - 35616824
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||  |||||| |||||||||||||||||||||| ||||||| |||||    
T  35616770 aaaagactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 51987868 - 51987826
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  51987868 catggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 51974478 - 51974433
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  51974478 catggtgggaaagaactctcctttcccaaattaaatggcacctaaa 51974433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 193898 - 193850
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 16270248 - 16270207
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  16270248 catggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 23440872 - 23440913
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  23440872 catggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 51988471 - 51988512
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| | |||||||||||||||||||||||||||| ||||    
T  51988471 catggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 23440665 - 23440617
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| ||| || |||||||| ||||||||||||||||||||| ||||    
T  23440665 acttttccatagttggaaagaactctcctttcccaaattaaatggcacc 23440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 48971753 - 48971705
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||| || |||||||| ||||||||||||||||||||| ||||    
T  48971753 actttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 17227095 - 17226968
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||  |||||| |||||||    
T  17227095 gaagataggaagataaaaatctagtgttgagggactattgtaatagtgtgttctttgtatgattcattggttagaaaagattttcccatggtgggaaaga 17226996  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    | ||||||||||||||||||||| ||||    
T  17226995 aatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 17227943 - 17227996
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  17227943 aaaagactttttcatggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 41755541 - 41755493
Alignment:
Q  160 tcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaatt 208  Q
    ||||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  41755541 tcatggtgggaaaaaactctcctttcccaaattaaatgacacctaaatt 41755493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 32490195 - 32490238
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| |||||| |||||||| |||||||||||||||||||||    
T  32490195 acttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 36750444 - 36750487
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  36750444 catggtgggaaagaactctcctttcccaaattaaatggcaccta 36750487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 49757189 - 49757223
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaa 195  Q
    |||||||||||| ||||||||||||||||||||||    
T  49757189 catggtaggaaaaaagtctcctttcccaaattaaa 49757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 19132600 - 19132563
Alignment:
Q  165 gtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  19132600 gtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 44687163 - 44687212
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||| | |||||| ||||||||||||||||||||| |||||    
T  44687163 acttttccatggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 4486555 - 4486611
Alignment:
Q  85 agataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    |||||| ||| ||||||| ||||||||||||||||||||| | ||| | ||||||||    
T  4486555 agataaaaatttagtgtttagagactattgtaatagtgtgctttttatgtgatccaa 4486611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 38922784 - 38922748
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||||||||| || |||||||||||||||||||||    
T  38922784 catggtaggaaataactctcctttcccaaattaaatg 38922748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 38923665 - 38923713
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||| |||||||| |||| |||||||||||||||| ||||    
T  38923665 acttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 9573762 - 9573636
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   || || | |||||    
T  9573762 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcctatagtggaaaaga 9573663  T
Q  175 agtctcctttcccaaattaaatgtcac 201  Q
    |||||| |||||||| |||||||||||    
T  9573662 agtctcatttcccaagttaaatgtcac 9573636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 7531870 - 7531829
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7531870 catggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 7193379 - 7193337
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  7193379 catggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 7532456 - 7532489
Alignment:
Q  170 aaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  7532456 aaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 9574566 - 9574619
Alignment:
Q  149 aaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||   ||||| |||||||||||||||||||||| ||||||| ||||    
T  9574566 aaaagactttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 33480635 - 33480676
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  33480635 catggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 22582486 - 22582522
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22582486 catggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 22587317 - 22587353
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22587317 catggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 2155 - 2034
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaa 175  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2155 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2056  T
Q  176 gtctcctttcccaaattaaatg 197  Q
    || || |||||||  |||||||    
T  2055 gtatcatttcccaggttaaatg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 2273 - 2152
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaa 175  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2273 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2174  T
Q  176 gtctcctttcccaaattaaatg 197  Q
    || || |||||||  |||||||    
T  2173 gtatcatttcccaggttaaatg 2152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 42455076 - 42455036
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcac 201  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  42455076 catggtagaaaagaagtctcctttcccaaattaaatgtcac 42455036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 7677465 - 7677422
Alignment:
Q  154 actttttcatggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  7677465 actttttcatggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 41194554 - 41194510
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||| |||||||| ||||||||||||||||||||| |||||||    
T  41194554 catggtgggaaagaactctcctttcccaaattaaatggcacctaa 41194510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 23683512 - 23683461
Alignment:
Q  92 aatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 143  Q
    |||| |||||||| |||||||||||||| ||||||| || ||||||||||||    
T  23683512 aatcaagtgttgaaagactattgtaataatgtgttccttatatgatccaatg 23683461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 38778895 - 38778852
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||    
T  38778895 catggtgggaaagaactctcctttcccaaattaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 19737901 - 19737947
Alignment:
Q  97 agtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 143  Q
    ||||||||||||||||||||||||||||||  || ||||||| ||||    
T  19737901 agtgttgagagactattgtaatagtgtgtttcttatatgatctaatg 19737947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 37468951 - 37468909
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  37468951 catggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 47331920 - 47332002
Alignment:
Q  121 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||| |  ||||||||||| ||||||  ||||  |||||| ||||| || |  ||||||||||||||||||||||||    
T  47331920 tgtgttctttattagatccaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatgtcacct 47332002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 668220 - 668179
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  668220 catggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 4984889 - 4984805
Alignment:
Q  121 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||||||| |  ||||||||||| ||||||  ||||| |||||| ||||| || |  |||||||||||||||||| ||||||||    
T  4984889 tgtgttctttattagatccaatggtcagaaaaagcttttccatggt-ggaaaaaactaacctttcccaaattaaatgccacctaaa 4984805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 17145663 - 17145622
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  17145663 catggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 37469012 - 37469053
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  37469012 catggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 38779570 - 38779611
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  38779570 catggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 45887947 - 45888032
Alignment:
Q  121 tgtgttctttgtatgatccaatggttagaaaagactttttcatggtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||||||| |  ||||||||||| ||||||  ||||  |||||| ||||| || |  |||||||||||||||||| ||||||||    
T  45887947 tgtgttctttattagatccaatggtcagaaaaagctttcccatggtgggaaaaaactagcctttcccaaattaaatgccacctaaa 45888032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7677816 - 7677852
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||| |||||||| |||||||||||||||||||||    
T  7677816 catggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 167 - 209
Alignment:
Q  161 catggtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||| |||||||| ||||||||||||||||||||| |||||    
T  167 catggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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