View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_24 (Length: 439)
Name: NF10049A_low_24
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Complemental strand, 41337397 - 41336976
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41337397 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
41337298 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41337297 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
41337198 |
T |
|
| Q |
207 |
gtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctt |
306 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41337197 |
gtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtctgttctt |
41337098 |
T |
|
| Q |
307 |
tttcccaaacgctgaacgtgcaacgatcccataagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaaca |
406 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41337097 |
tttcccaaacgctgaacgtgccacgatcccataagtcattgagaaaatcgacttagagagattaacgattgatccttcatttgcagatattgatttaaca |
41336998 |
T |
|
| Q |
407 |
agatcggacacctcttcatctc |
428 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
41336997 |
agatcggacacctcttcttctc |
41336976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 31178399 - 31178671
Alignment:
| Q |
48 |
cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat |
147 |
Q |
| |
|
||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||| || ||||| ||||| ||||||||| || ||| ||||||||||| |
|
|
| T |
31178399 |
cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat |
31178498 |
T |
|
| Q |
148 |
cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct |
247 |
Q |
| |
|
| ||||||||||| || || | |||| | |||||||||| | ||| ||| |||||| ||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
31178499 |
catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct |
31178598 |
T |
|
| Q |
248 |
cccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttcccaaacgctg |
320 |
Q |
| |
|
|||| | | | | ||||| ||||| ||||| |||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
31178599 |
cccatcaaactcgctatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaacgctg |
31178671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 38 - 428
Target Start/End: Original strand, 31188434 - 31188824
Alignment:
| Q |
38 |
tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt |
137 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||| ||||||||| ||||||||||||||| || ||||| ||||| |||||||| |||||| | |
|
|
| T |
31188434 |
tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat |
31188533 |
T |
|
| Q |
138 |
cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat |
237 |
Q |
| |
|
||||||||||| ||||||||||| || | | |||||| | |||||| | ||||| ||| ||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
31188534 |
cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat |
31188633 |
T |
|
| Q |
238 |
acaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttcccaaacgctgaacgtgcaacgatccca |
337 |
Q |
| |
|
|||||||||||||| | | | |||| ||||| ||||||||| ||| ||||||| | || ||||||||||||||| |||| ||||| |
|
|
| T |
31188634 |
acaaaattctcccagcaaactagctatctcctttattgctgatttgaaagcttcttggtgtttactccttttcccaaacgctgctcgtgtcgttatccct |
31188733 |
T |
|
| Q |
338 |
taagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaacaagatcggacacctcttcatctc |
428 |
Q |
| |
|
| |||||| | |||||| | | |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31188734 |
gatgtcattaaaaaaatcttatgactgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctcttcttctc |
31188824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 41332468 - 41332065
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||| ||||| ||||| || || || |||| ||||| | |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| || |
|
|
| T |
41332468 |
tgatttcatattgtcatcggttaaaggatgttctgagtaataattttcctgttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttcc |
41332369 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
206 |
Q |
| |
|
||||| || |||| ||||| | |||||||||||||| |||| |||||| ||||| || | | | || | | |||||||| | ||||| | ||||| |
|
|
| T |
41332368 |
ttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccctactcatgcattgaa |
41332269 |
T |
|
| Q |
207 |
gtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctt |
306 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| |||| |||| ||||| ||||| ||| ||| |||| |||| ||||||| | ||||| ||| ||| | |
|
|
| T |
41332268 |
gcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttctattcct |
41332169 |
T |
|
| Q |
307 |
tttcccaaacgctgaacgtgcaacgatcccataagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaaca |
406 |
Q |
| |
|
||||||||| |||| || || ||||||| ||||||||||||||| | || |||||| | | ||||||||| |||||| ||||||||||||| |
|
|
| T |
41332168 |
tttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgatttaaca |
41332069 |
T |
|
| Q |
407 |
agat |
410 |
Q |
| |
|
|||| |
|
|
| T |
41332068 |
agat |
41332065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
| Q |
39 |
gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc |
138 |
Q |
| |
|
||||||| ||||||| ||||| | |||||||||| ||||||||| ||||||||||||||| || ||||| ||||| ||||||||| |||||| || |
|
|
| T |
31225378 |
gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc |
31225279 |
T |
|
| Q |
139 |
ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata |
238 |
Q |
| |
|
|||||||||| ||||||||||| || | | |||||| |||||||| | ||||| ||| |||||| ||||| ||||||||||||| |||| ||||| |
|
|
| T |
31225278 |
ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata |
31225179 |
T |
|
| Q |
239 |
caaaattctccca |
251 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
31225178 |
caaaatcctccca |
31225166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 41316488 - 41316085
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||||||||| |||||||| || || |||||||||||| |||||| ||||||| ||||||||||||||| ||||| |||||||| |||||| || |
|
|
| T |
41316488 |
tgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgctttcttcc |
41316389 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
206 |
Q |
| |
|
||||| || || | ||||| | |||||||||||||||| || |||||| |||| || | | | || | | |||||||| ||||||| | ||||| |
|
|
| T |
41316388 |
ttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctctttgtgaagtttttccattttggtcttcgctctactcaagcattgaa |
41316289 |
T |
|
| Q |
207 |
gtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctt |
306 |
Q |
| |
|
| | ||||||||||||| ||||||| ||||||||| ||||||| | | | |||||||||||| |||| | ||||||| ||||||| || || | |
|
|
| T |
41316288 |
gcaatttaatagaaggaaacaaatccacaatacaaacgcctcccaacaaacttgctacttcctctattgctgatctaaacacttcttggtgtttgctcct |
41316189 |
T |
|
| Q |
307 |
tttcccaaacgctgaacgtgcaacgatcccataagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaaca |
406 |
Q |
| |
|
||||||||| || | || || |||||||| ||| |||| |||||| || || |||||||| | |||||||||| |||||| ||||||||||||| |
|
|
| T |
41316188 |
tttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaacaactgatccttcacttgcagttattgatttaaca |
41316089 |
T |
|
| Q |
407 |
agat |
410 |
Q |
| |
|
|||| |
|
|
| T |
41316088 |
agat |
41316085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 254
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
| Q |
68 |
agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt |
166 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || || ||||||||| | |||||||||||||| ||||||||||| ||||| | | || || |
|
|
| T |
41369918 |
agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga |
41369819 |
T |
|
| Q |
167 |
aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata |
254 |
Q |
| |
|
| | | || | | ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||| |
|
|
| T |
41369818 |
agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata |
41369731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 41286320 - 41286216
Alignment:
| Q |
211 |
tttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctttttc |
310 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||| |||| |||||||||||| |||| | ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
41286320 |
tttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttctttttc |
41286221 |
T |
|
| Q |
311 |
ccaaa |
315 |
Q |
| |
|
||||| |
|
|
| T |
41286220 |
ccaaa |
41286216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 41328455 - 41328054
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||| ||||| ||||| || || || |||| ||||||| |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| || |
|
|
| T |
41328455 |
tgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgcttgcttcc |
41328356 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
206 |
Q |
| |
|
||||| | |||| ||||| | |||||||||||| |||| ||||||||||| || | | | || | | |||||||| | ||| | | | ||||| |
|
|
| T |
41328355 |
ttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctctgtatgaagtttttccattttggtcttctccctagtcatccattgaa |
41328256 |
T |
|
| Q |
207 |
gtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctt |
306 |
Q |
| |
|
| | ||||||||||||||||||||| ||||| |||| ||| ||||| ||| | ||| ||| | || || | ||||||| | ||||||||| ||| | |
|
|
| T |
41328255 |
gcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtctattcct |
41328156 |
T |
|
| Q |
307 |
tttcccaaacgctgaacgtgcaacgatcccataagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaaca |
406 |
Q |
| |
|
||||||||| |||| || || ||||||| ||||||||||||||| | || |||||||| | |||||||||| |||||| ||||||||||||| |
|
|
| T |
41328155 |
tttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatccttcacttgcagttattgatttaaca |
41328056 |
T |
|
| Q |
407 |
ag |
408 |
Q |
| |
|
|| |
|
|
| T |
41328055 |
ag |
41328054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 41366644 - 41366335
Alignment:
| Q |
8 |
gattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttac |
107 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||| ||| || |||||| ||||||||||||||| ||||| || |||| ||| || | ||| |
|
|
| T |
41366644 |
gattttatattgtcgtcggtcaagggatgttgtgagtga---tttacacgttgaatcttgagaagaacatctactagatcatcattcttcctagctttct |
41366548 |
T |
|
| Q |
108 |
tgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaag |
207 |
Q |
| |
|
||||| | || | ||||||| |||||| |||||||||||| ||||| |||||| || | | | |||| | | || | | ||||| | ||||||| |
|
|
| T |
41366547 |
tgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaag |
41366448 |
T |
|
| Q |
208 |
tattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttcttt |
307 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||| |||||||||| ||| ||||| |||| |||||| ||||||| ||||||| | |||||| |
|
|
| T |
41366447 |
aattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttt |
41366348 |
T |
|
| Q |
308 |
ttcccaaacgctg |
320 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
41366347 |
tttccaaatgctg |
41366335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 41286494 - 41286404
Alignment:
| Q |
10 |
ttttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgctt |
100 |
Q |
| |
|
||||| ||| |||||||||||||| |||| |||||| || |||| ||||||| ||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
41286494 |
ttttaaattatcatcagtcaagggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttcatctttgctt |
41286404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 41324553 - 41324322
Alignment:
| Q |
11 |
tttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgt |
110 |
Q |
| |
|
|||||||| ||||| || || || |||||||||||| |||||| ||||||| ||||||||||||||| ||||| | ||| || ||||| || ||| |
|
|
| T |
41324553 |
tttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattcttcattgctatcttccttgt |
41324454 |
T |
|
| Q |
111 |
gattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtat |
210 |
Q |
| |
|
|| || || | ||||| | ||| ||||||||||||||| ||||||||||| || | | | || | | ||| |||| | ||||| || |||||| | |
|
|
| T |
41324453 |
gaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccctactcacgcattgaagcaa |
41324354 |
T |
|
| Q |
211 |
tttaatagaaggatacaaatcagcaatacaaa |
242 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
41324353 |
tttaatagaaggatacaaatcaacaatacaaa |
41324322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 31225052 - 31224989
Alignment:
| Q |
365 |
agattaatgattgatccttcatttgcagatattgatttaacaagatcggacacctcttcatctc |
428 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
31225052 |
agattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctcttcttctc |
31224989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 41310748 - 41310595
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||| ||||| ||||| || || || |||| ||||||| |||||| |||| || ||||||||||||||| ||||| |||||||| ||||| || |
|
|
| T |
41310748 |
tgatttcatattgtcatccgttaaaggatgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcattgctatcttcc |
41310649 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctct |
160 |
Q |
| |
|
|| || || || | ||||| | ||||||||||||||||||| ||| ||||||| |
|
|
| T |
41310648 |
ttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatatcatataaatctct |
41310595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
| Q |
109 |
gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca |
154 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41431319 |
gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca |
41431274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 41366278 - 41366227
Alignment:
| Q |
377 |
gatccttcatttgcagatattgatttaacaagatcggacacctcttcatctc |
428 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
41366278 |
gatccttcacttgcagttattgatttaacaagatttgacacctcttcttctc |
41366227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 410
Target Start/End: Complemental strand, 41324232 - 41324154
Alignment:
| Q |
332 |
atcccataagtcattgagaaaatcgacttagagagattaatgattgatccttcatttgcagatattgatttaacaagat |
410 |
Q |
| |
|
|||||||| ||||||||||||||| | || |||||||| |||||||||||| |||||| ||||||| || |||||| |
|
|
| T |
41324232 |
atcccatatgtcattgagaaaatcttatgagtgagattaacaattgatccttcacttgcagttattgatgtagcaagat |
41324154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 17249091 - 17249396
Alignment:
| Q |
7 |
tgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgtttta |
106 |
Q |
| |
|
|||||||||||| ||||||||||| | | ||||| || | || |||| ||||||| ||||| |||| |||||||||| ||||||||||||| || ||| |
|
|
| T |
17249091 |
tgattttatattgtcatcagtcaatgaattttgtgggtaatcactttcttgttgaatcttgataagagcatcaactagatcttcatccttgcgtgctttg |
17249190 |
T |
|
| Q |
107 |
ctgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaa |
206 |
Q |
| |
|
| || ||||| ||||||| ||||| |||||||||||| ||||||| || | || | | | || | | |||| ||||| ||||||| ||| || |
|
|
| T |
17249191 |
ttttgtccatttctgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacctgacttacccttttaa |
17249290 |
T |
|
| Q |
207 |
gtattttaatagaaggatacaaatcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacacttgttggtgtctgttctt |
306 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||| | | || | ||||||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
17249291 |
gtattttgatagaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttcct |
17249390 |
T |
|
| Q |
307 |
tttccc |
312 |
Q |
| |
|
|||||| |
|
|
| T |
17249391 |
tttccc |
17249396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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