View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_241 (Length: 249)

Name: NF10049A_low_241
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_241
NF10049A_low_241
[»] chr3 (3 HSPs)
chr3 (20-246)||(53984798-53985024)
chr3 (23-245)||(53971094-53971315)
chr3 (28-84)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (23-84)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (20-84)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (23-83)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (43-84)||(19935380-19935421)
chr7 (43-84)||(19966519-19966560)
chr7 (37-84)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 53985024 - 53984798
Alignment:
Q  20 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53985024 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaagatatgataaggataatttgacgatttaattta 53984925  T
Q  120 atttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttacgaggacatttggcactatccacaaa 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  53984924 atttggtaaatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttatgaggacatttggcactatccacaaa 53984825  T
Q  220 atattccgacgtgcatttcatctcagt 246  Q
    |||||||||||||||||||||||||||    
T  53984824 atattccgacgtgcatttcatctcagt 53984798  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 53971315 - 53971094
Alignment:
Q  23 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtttaaga-tatgataaggataatttgacgatttaatttaat 121  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||| |||||||||||||    
T  53971315 gtggatgctagacgtgctctaacatagtccgaaacttcaacatcttaccattcatcaggtatgatactatgattaggataatttgatgatttaatttaat 53971216  T
Q  122 ttggtagatctacctctacacacgtcttaatgctccctccatcttattacaggaaatagagaatggaatttacgaggacatttggcactatccacaaaat 221  Q
    |||||| || |||||||  ||| |||||| | | |||||| |||||||  |||| || ||| |||||||||| ||||||| ||||||  | |||||||||    
T  53971215 ttggtaaatatacctct--acatgtcttactaccccctccgtcttattgtaggagatggaggatggaatttatgaggacaattggcaggacccacaaaat 53971118  T
Q  222 attccgacgtgcatttcatctcag 245  Q
     ||||||| || ||||||||||||    
T  53971117 gttccgacatgtatttcatctcag 53971094  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 53071908 - 53071964
Alignment:
Q  28 tgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    |||||||  |||||||||| ||||| || ||||||||||||| ||||||| ||||||    
T  53071908 tgctagaaatgcttcaacacagtccaaagcttcaacatcttatcattcatgaggttt 53071964  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 34036297 - 34036358
Alignment:
Q  23 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    ||||||||||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  34036297 gtggatgctagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 34036358  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6688093 - 6688157
Alignment:
Q  20 gaagtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    |||||||||| ||||  |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  6688093 gaagtggatggtagaaatgcttcaacacagtcccaagcttcaacatcttatcattcatgaggttt 6688157  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 16164058 - 16163998
Alignment:
Q  23 gtggatgctagacgtgcttcaacatagtcccaaacttcaacatcttaccattcatcaggtt 83  Q
    |||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||||||||    
T  16164058 gtggatgctagaagtgcttcaacagaggcccaagcttgaacatcttgccattcatcaggtt 16163998  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 19935380 - 19935421
Alignment:
Q  43 aacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19935380 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19935421  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 19966519 - 19966560
Alignment:
Q  43 aacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  19966519 aacattgtcccaaacttcaaaatcttaccattcatcaggttt 19966560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 31014482 - 31014529
Alignment:
Q  37 tgcttcaacatagtcccaaacttcaacatcttaccattcatcaggttt 84  Q
    |||||||||| |||||||| ||||||||||||| ||||||| ||||||    
T  31014482 tgcttcaacacagtcccaagcttcaacatcttatcattcataaggttt 31014529  T

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