View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_248 (Length: 247)
Name: NF10049A_low_248
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_248 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 8880538 - 8880644
Alignment:
| Q |
119 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8880538 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcgagct |
8880637 |
T |
|
| Q |
219 |
gactaat |
225 |
Q |
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||||||| |
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| T |
8880638 |
gactaat |
8880644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 8884662 - 8884746
Alignment:
| Q |
141 |
cttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagctgactaat |
225 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||| || || ||||||||||| || |||||| |||| |
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| T |
8884662 |
cttacgcaagaatccattttccattgagcaaactcaaggcatcagtggaagcaggtgtgggattcttagcttccagctgagtaat |
8884746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8880420 - 8880470
Alignment:
| Q |
1 |
aataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa |
51 |
Q |
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| T |
8880420 |
aataagcagaatatgagaattcccttccaaacacaaatcattgtctaacaa |
8880470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 45073677 - 45073783
Alignment:
| Q |
119 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcaagct |
218 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||| |||| |
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| T |
45073677 |
gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct |
45073776 |
T |
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| Q |
219 |
gactaat |
225 |
Q |
| |
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||||||| |
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|
| T |
45073777 |
gactaat |
45073783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45073560 - 45073611
Alignment:
| Q |
1 |
aataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaacaa |
51 |
Q |
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||||||||||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
45073560 |
aataagcagaacatgataagttcccttccaaacacaaatcattgtctaacaa |
45073611 |
T |
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