View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_249 (Length: 247)
Name: NF10049A_low_249
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_249 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 50222720 - 50222887
Alignment:
| Q |
80 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
179 |
Q |
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| T |
50222720 |
aaaaaggcgaaaccaaaatgtatcatctttcttaactctgtcttgtattattctactcttattatgcatcaaacataaaaccaaaagtcttatcttatgt |
50222819 |
T |
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| Q |
180 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatc |
247 |
Q |
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| T |
50222820 |
cctttcattttctgacctaatattaactggaataagtagcattatctgctaggaaaacttattttatc |
50222887 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 50222562 - 50222640
Alignment:
| Q |
2 |
gtgcagtatcatagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
80 |
Q |
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| T |
50222562 |
gtgcagaatcttagagaatgcaaagttattcttatcttttgtttttcaatcaaaactgtaaatatttattttcaagtga |
50222640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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