View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_251 (Length: 247)
Name: NF10049A_low_251
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_251 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 25801903 - 25802075
Alignment:
| Q |
10 |
cactttcaaactacctaattacccacaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
109 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25801903 |
cactttcaaattacctaattaccctcaaaccagcacaagtccaaatcatgccccttccaattataaatacataacaacagttaccattacatatgcaata |
25802002 |
T |
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| Q |
110 |
tcacacaaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
182 |
Q |
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| T |
25802003 |
tcacacaaacaaaaagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
25802075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 25816102 - 25816168
Alignment:
| Q |
116 |
aaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
182 |
Q |
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| T |
25816102 |
aaacaaatagagaagaaacagaacaatgaaatacaacgagatatcacatttcagccacccaaaacac |
25816168 |
T |
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Target: scaffold0026 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 112617 - 112456
Alignment:
| Q |
10 |
cactttcaaactacctaattacccacaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
109 |
Q |
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| T |
112617 |
cactttcaaattacttaattaccctcaaaccaacacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaata |
112518 |
T |
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| Q |
110 |
tcacacaaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacac |
182 |
Q |
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| T |
112517 |
tcacacaaacaaa-----------cagaacaatgaaatacagtgagatatcacatttcagccacccaaaacac |
112456 |
T |
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Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 12585626 - 12585682
Alignment:
| Q |
181 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
237 |
Q |
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| T |
12585626 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
12585682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 26571608 - 26571644
Alignment:
| Q |
203 |
caattacaattgtcctctacgacttgtcatatttttg |
239 |
Q |
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| T |
26571608 |
caattacaattgtcctatacgacttgtcatttttttg |
26571644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 22973031 - 22972975
Alignment:
| Q |
181 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
237 |
Q |
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| T |
22973031 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
22972975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 6901726 - 6901670
Alignment:
| Q |
181 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
237 |
Q |
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| T |
6901726 |
accaaaacccagctgccaacaacaattacaattgtcctctacgacttgtcatatttt |
6901670 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 49600661 - 49600701
Alignment:
| Q |
181 |
accaaaacccagctgccaacaacaattacaattgtcctcta |
221 |
Q |
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| T |
49600661 |
accaaaacccagctgccaacaacaattacaattgtcctcta |
49600701 |
T |
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