View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_253 (Length: 247)
Name: NF10049A_low_253
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_253 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 8974782 - 8974589
Alignment:
| Q |
33 |
gtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaa |
132 |
Q |
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| T |
8974782 |
gtgctttgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaa |
8974683 |
T |
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| Q |
133 |
tatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatga |
226 |
Q |
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| T |
8974682 |
tatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatga |
8974589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 8963375 - 8963193
Alignment:
| Q |
44 |
gggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatg |
143 |
Q |
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| T |
8963375 |
gggttgatatgaccagctcccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatg |
8963276 |
T |
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| Q |
144 |
ttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatga |
226 |
Q |
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| T |
8963275 |
ttgtcatcattgccgacctaatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatga |
8963193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 9948194 - 9948361
Alignment:
| Q |
58 |
agctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgct |
157 |
Q |
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| T |
9948194 |
agctcctaatgcaagaggagttgcaactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatggttgatgttgtcataattgct |
9948293 |
T |
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| Q |
158 |
gacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatga |
226 |
Q |
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| T |
9948294 |
gaccttatagctgcaggg-tccaatcagcatgtgctcctttcaaaagtgctccaacaccagcaacatga |
9948361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 8945757 - 8945891
Alignment:
| Q |
92 |
ccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtg |
191 |
Q |
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| T |
8945757 |
cctttttcaatgtctttgatatgttccttagtattatcatatatgtttgatgttgtcataattgccgaccttatagctgcagggctccaatcaacacgcg |
8945856 |
T |
|
| Q |
192 |
cagctttcaaaagtgctcctacaccagcaacatga |
226 |
Q |
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| T |
8945857 |
ctccttttaaaagtgctcctacaccggcaacatga |
8945891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 8958353 - 8958179
Alignment:
| Q |
52 |
atgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatc |
151 |
Q |
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|||||||||||| ||||||||| |||||| | || || | |||||||||||||| ||| |||||||||||||||||| |||||| || |||||||| |
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| T |
8958353 |
atgaccagctcccaatgcaaaaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtattatcaattatgtccgacgttgtcata |
8958254 |
T |
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| Q |
152 |
attgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatga |
226 |
Q |
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| T |
8958253 |
attgccgaccgaatcgcggcagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatga |
8958179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 21686861 - 21687053
Alignment:
| Q |
33 |
gtgctctgttggggttgatatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaa |
132 |
Q |
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||||||| || ||||| |||||||||||||| ||||||||| |||||| | |||| || |||||||||||||| ||| ||||||||||||| || || |
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| T |
21686861 |
gtgctctattagggttaatatgaccagctcccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaa |
21686960 |
T |
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| Q |
133 |
tatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatg |
225 |
Q |
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|||||||||||||||||| ||||| |||||||||| || ||||||||| || ||||| |||| ||||| ||| ||||||| |||||||| |
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| T |
21686961 |
tatgtctgatgttgtcataattgccgacctaatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacatg |
21687053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 34962500 - 34962629
Alignment:
| Q |
52 |
atgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatc |
151 |
Q |
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|||||||||||| |||||||||||||||| | |||| || ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |
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| T |
34962500 |
atgaccagctcccaatgcaaaaggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcatt |
34962596 |
T |
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| Q |
152 |
attgctgacctaatagctgcagggctccaatca |
184 |
Q |
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| T |
34962597 |
attgccgaccgaattgctgctgggctccaatca |
34962629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 19375625 - 19375744
Alignment:
| Q |
86 |
ttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacctaatagctgcagggctccaatcaa |
185 |
Q |
| |
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||||| ||||||||||||||||| ||||||| ||||||| || | |||||||||||||||||| || || || | ||| |||| || |||||||||| |
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| T |
19375625 |
ttgttaccttttccaatgtctttcataagttttgtagtattgtctattatgtctgatgttgtcataatcgcagaacgaattgctgtcggactccaatcaa |
19375724 |
T |
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| Q |
186 |
catgtgcagctttcaaaagt |
205 |
Q |
| |
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| T |
19375725 |
catgtgctcctttcaaaagt |
19375744 |
T |
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