View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_254 (Length: 247)
Name: NF10049A_low_254
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_254 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 3271724 - 3271966
Alignment:
| Q |
6 |
actgagatgaatagtttattactatcatttatggtatcatattcaatttgtaatggtattgaaatccaatctg-acctctgtgaatgatcaatatatact |
104 |
Q |
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| T |
3271724 |
actgacatgaatagttcattactatcatttatggtatcctattcaatttgtaatggtattgaaatccaatctggagctctgtgaatgatcaatatatact |
3271823 |
T |
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| Q |
105 |
cttccatcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatctggacaaacggtgaatgcatggaacaaatgttaaaaacaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
3271824 |
cttccatcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatacatggaacaaatgttaaaaacaaa |
3271923 |
T |
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| Q |
205 |
cacaaaccgctatgctgagatgtgagacaacgaatctaatatg |
247 |
Q |
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| T |
3271924 |
cacaaaacgctatgctgagctgtgagacaaagaatctaatatg |
3271966 |
T |
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